Hb_011501_010

Information

Type -
Description -
Location Contig11501: 14909-16454
Sequence    

Annotation

kegg
ID rcu:RCOM_0805160
description carboxy-lyase, putative
nr
ID XP_012069315.1
description PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5-like [Jatropha curcas]
swissprot
ID Q8LBB7
description Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5 OS=Arabidopsis thaliana GN=LOG5 PE=1 SV=1
trembl
ID A0A067KWA9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03947 PE=4 SV=1
Gene Ontology
ID GO:0005829
description cytokinin riboside 5 -monophosphate phosphoribohydrolase log5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04558: 14832-15039 , PASA_asmbl_04559: 15142-16404
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011501_010 0.0 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5-like [Jatropha curcas]
2 Hb_000187_050 0.0879927815 - - PREDICTED: uncharacterized protein LOC105650800 [Jatropha curcas]
3 Hb_000563_470 0.1231735027 - - PREDICTED: uncharacterized protein LOC105643461 [Jatropha curcas]
4 Hb_009113_020 0.1300486892 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
5 Hb_003750_090 0.1314764579 - - BnaC02g34020D [Brassica napus]
6 Hb_001863_330 0.133049578 - - RNA-binding region-containing protein, putative [Ricinus communis]
7 Hb_002686_320 0.1338470109 - - syntaxin, putative [Ricinus communis]
8 Hb_001623_250 0.1353026282 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
9 Hb_002836_110 0.1373943379 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
10 Hb_000261_550 0.1389360298 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
11 Hb_000671_020 0.141310808 - - PREDICTED: RNA-binding protein 38 [Jatropha curcas]
12 Hb_016333_010 0.1455335558 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
13 Hb_009545_060 0.1468561148 - - PREDICTED: uncharacterized protein LOC105632005 [Jatropha curcas]
14 Hb_174639_010 0.1476463226 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_004254_060 0.1482064245 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
16 Hb_007632_070 0.1486218017 - - kinase, putative [Ricinus communis]
17 Hb_000538_290 0.1500939109 - - hypothetical protein RCOM_0303940 [Ricinus communis]
18 Hb_127839_010 0.1504181572 - - hypothetical protein PRUPE_ppa000956mg [Prunus persica]
19 Hb_003006_070 0.1504670503 - - aquaporin [Manihot esculenta]
20 Hb_000977_190 0.1507204546 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_011501_010 Hb_011501_010 Hb_000187_050 Hb_000187_050 Hb_011501_010--Hb_000187_050 Hb_000563_470 Hb_000563_470 Hb_011501_010--Hb_000563_470 Hb_009113_020 Hb_009113_020 Hb_011501_010--Hb_009113_020 Hb_003750_090 Hb_003750_090 Hb_011501_010--Hb_003750_090 Hb_001863_330 Hb_001863_330 Hb_011501_010--Hb_001863_330 Hb_002686_320 Hb_002686_320 Hb_011501_010--Hb_002686_320 Hb_159809_040 Hb_159809_040 Hb_000187_050--Hb_159809_040 Hb_000187_050--Hb_002686_320 Hb_000538_290 Hb_000538_290 Hb_000187_050--Hb_000538_290 Hb_000977_190 Hb_000977_190 Hb_000187_050--Hb_000977_190 Hb_000187_050--Hb_009113_020 Hb_007632_070 Hb_007632_070 Hb_000563_470--Hb_007632_070 Hb_127839_010 Hb_127839_010 Hb_000563_470--Hb_127839_010 Hb_000563_470--Hb_001863_330 Hb_002224_020 Hb_002224_020 Hb_000563_470--Hb_002224_020 Hb_149882_010 Hb_149882_010 Hb_000563_470--Hb_149882_010 Hb_016333_010 Hb_016333_010 Hb_000563_470--Hb_016333_010 Hb_009113_020--Hb_002686_320 Hb_002836_110 Hb_002836_110 Hb_009113_020--Hb_002836_110 Hb_009113_020--Hb_000538_290 Hb_009545_060 Hb_009545_060 Hb_009113_020--Hb_009545_060 Hb_001856_210 Hb_001856_210 Hb_009113_020--Hb_001856_210 Hb_005398_050 Hb_005398_050 Hb_009113_020--Hb_005398_050 Hb_003750_090--Hb_000187_050 Hb_000445_260 Hb_000445_260 Hb_003750_090--Hb_000445_260 Hb_011861_130 Hb_011861_130 Hb_003750_090--Hb_011861_130 Hb_003750_090--Hb_002686_320 Hb_001971_040 Hb_001971_040 Hb_003750_090--Hb_001971_040 Hb_003750_090--Hb_009113_020 Hb_001863_330--Hb_016333_010 Hb_087992_010 Hb_087992_010 Hb_001863_330--Hb_087992_010 Hb_001863_330--Hb_127839_010 Hb_001863_330--Hb_007632_070 Hb_001863_330--Hb_002224_020 Hb_000185_180 Hb_000185_180 Hb_001863_330--Hb_000185_180 Hb_002686_320--Hb_000977_190 Hb_002686_320--Hb_000538_290 Hb_002686_320--Hb_009545_060 Hb_000701_020 Hb_000701_020 Hb_002686_320--Hb_000701_020 Hb_006588_100 Hb_006588_100 Hb_002686_320--Hb_006588_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.988394 1.01453 0 0.041659
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0965879 0.236601

CAGE analysis