Hb_003750_090

Information

Type -
Description -
Location Contig3750: 73416-74689
Sequence    

Annotation

kegg
ID eus:EUTSA_v10011410mg
description hypothetical protein
nr
ID CDY48812.1
description BnaC02g34020D [Brassica napus]
swissprot
ID -
description -
trembl
ID J3MXA3
description Uncharacterized protein OS=Oryza brachyantha GN=OB09G16320 PE=3 SV=1
Gene Ontology
ID GO:0000786
description hmg-y-related protein a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003750_090 0.0 - - BnaC02g34020D [Brassica napus]
2 Hb_000187_050 0.1172890792 - - PREDICTED: uncharacterized protein LOC105650800 [Jatropha curcas]
3 Hb_000445_260 0.1191759291 - - PREDICTED: uncharacterized protein LOC105127729 [Populus euphratica]
4 Hb_011861_130 0.1238036806 - - PREDICTED: uncharacterized protein LOC105634795 [Jatropha curcas]
5 Hb_002686_320 0.1281133991 - - syntaxin, putative [Ricinus communis]
6 Hb_001971_040 0.128356427 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
7 Hb_009113_020 0.1288807 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
8 Hb_010080_050 0.1311620353 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
9 Hb_011501_010 0.1314764579 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG5-like [Jatropha curcas]
10 Hb_001856_210 0.1318920435 - - PREDICTED: uncharacterized protein LOC105644171 [Jatropha curcas]
11 Hb_002836_110 0.1379782105 transcription factor TF Family: TUB PREDICTED: tubby-like protein 8 [Jatropha curcas]
12 Hb_003464_010 0.1405393455 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005211_170 0.1408745689 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
14 Hb_006693_010 0.1419505034 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]
15 Hb_000120_930 0.1436518775 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
16 Hb_002028_270 0.1441845332 - - Pectinesterase-1 precursor, putative [Ricinus communis]
17 Hb_001623_250 0.1447842922 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
18 Hb_000538_290 0.1457831249 - - hypothetical protein RCOM_0303940 [Ricinus communis]
19 Hb_000878_080 0.1460134779 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
20 Hb_006810_040 0.1475399275 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003750_090 Hb_003750_090 Hb_000187_050 Hb_000187_050 Hb_003750_090--Hb_000187_050 Hb_000445_260 Hb_000445_260 Hb_003750_090--Hb_000445_260 Hb_011861_130 Hb_011861_130 Hb_003750_090--Hb_011861_130 Hb_002686_320 Hb_002686_320 Hb_003750_090--Hb_002686_320 Hb_001971_040 Hb_001971_040 Hb_003750_090--Hb_001971_040 Hb_009113_020 Hb_009113_020 Hb_003750_090--Hb_009113_020 Hb_159809_040 Hb_159809_040 Hb_000187_050--Hb_159809_040 Hb_000187_050--Hb_002686_320 Hb_011501_010 Hb_011501_010 Hb_000187_050--Hb_011501_010 Hb_000538_290 Hb_000538_290 Hb_000187_050--Hb_000538_290 Hb_000977_190 Hb_000977_190 Hb_000187_050--Hb_000977_190 Hb_000187_050--Hb_009113_020 Hb_010080_050 Hb_010080_050 Hb_000445_260--Hb_010080_050 Hb_001856_210 Hb_001856_210 Hb_000445_260--Hb_001856_210 Hb_005211_170 Hb_005211_170 Hb_000445_260--Hb_005211_170 Hb_003464_010 Hb_003464_010 Hb_000445_260--Hb_003464_010 Hb_002307_150 Hb_002307_150 Hb_000445_260--Hb_002307_150 Hb_000878_080 Hb_000878_080 Hb_000445_260--Hb_000878_080 Hb_001288_040 Hb_001288_040 Hb_011861_130--Hb_001288_040 Hb_011861_130--Hb_000878_080 Hb_004880_040 Hb_004880_040 Hb_011861_130--Hb_004880_040 Hb_097292_010 Hb_097292_010 Hb_011861_130--Hb_097292_010 Hb_002203_010 Hb_002203_010 Hb_011861_130--Hb_002203_010 Hb_002686_320--Hb_009113_020 Hb_002686_320--Hb_000977_190 Hb_002686_320--Hb_000538_290 Hb_009545_060 Hb_009545_060 Hb_002686_320--Hb_009545_060 Hb_000701_020 Hb_000701_020 Hb_002686_320--Hb_000701_020 Hb_006588_100 Hb_006588_100 Hb_002686_320--Hb_006588_100 Hb_006810_040 Hb_006810_040 Hb_001971_040--Hb_006810_040 Hb_002028_270 Hb_002028_270 Hb_001971_040--Hb_002028_270 Hb_089140_070 Hb_089140_070 Hb_001971_040--Hb_089140_070 Hb_006693_010 Hb_006693_010 Hb_001971_040--Hb_006693_010 Hb_001971_040--Hb_010080_050 Hb_000020_050 Hb_000020_050 Hb_001971_040--Hb_000020_050 Hb_002836_110 Hb_002836_110 Hb_009113_020--Hb_002836_110 Hb_009113_020--Hb_000538_290 Hb_009113_020--Hb_009545_060 Hb_009113_020--Hb_001856_210 Hb_005398_050 Hb_005398_050 Hb_009113_020--Hb_005398_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.492657 0.46346 16.1477 17.7881 0 0.627659
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.986057 2.3846

CAGE analysis