Hb_089140_070

Information

Type -
Description -
Location Contig89140: 49831-50457
Sequence    

Annotation

kegg
ID cit:102617756
description uncharacterized LOC102617756
nr
ID XP_012077045.1
description PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067G2Q4
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028534mg PE=4 SV=1
Gene Ontology
ID GO:0008080
description membrane lipoprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61669: 49849-50335
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089140_070 0.0 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
2 Hb_001971_040 0.0770438005 - - PREDICTED: beta-glucosidase 44-like [Jatropha curcas]
3 Hb_012092_040 0.0778835521 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
4 Hb_006810_040 0.082346782 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
5 Hb_010080_050 0.0905326456 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
6 Hb_000390_010 0.0948912926 - - PREDICTED: protein CDI [Jatropha curcas]
7 Hb_000035_230 0.0997606298 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
8 Hb_002686_320 0.100386288 - - syntaxin, putative [Ricinus communis]
9 Hb_001950_090 0.1010121489 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
10 Hb_009113_020 0.1043370916 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
11 Hb_003464_010 0.1050031762 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000977_190 0.1057704325 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005332_030 0.1060545154 - - conserved hypothetical protein [Ricinus communis]
14 Hb_177195_010 0.1061352519 - - Leucine-rich repeat protein kinase family protein isoform 3, partial [Theobroma cacao]
15 Hb_002028_270 0.1064469344 - - Pectinesterase-1 precursor, putative [Ricinus communis]
16 Hb_001247_060 0.10684441 - - zinc finger protein, putative [Ricinus communis]
17 Hb_003847_060 0.1068624257 - - syntaxin, putative [Ricinus communis]
18 Hb_000089_090 0.1078556155 - - hypothetical protein POPTR_0019s12670g [Populus trichocarpa]
19 Hb_001052_020 0.1079492335 - - hypothetical protein JCGZ_26487 [Jatropha curcas]
20 Hb_020025_030 0.1090142048 transcription factor TF Family: PHD PREDICTED: protein Jade-1 [Populus euphratica]

Gene co-expression network

sample Hb_089140_070 Hb_089140_070 Hb_001971_040 Hb_001971_040 Hb_089140_070--Hb_001971_040 Hb_012092_040 Hb_012092_040 Hb_089140_070--Hb_012092_040 Hb_006810_040 Hb_006810_040 Hb_089140_070--Hb_006810_040 Hb_010080_050 Hb_010080_050 Hb_089140_070--Hb_010080_050 Hb_000390_010 Hb_000390_010 Hb_089140_070--Hb_000390_010 Hb_000035_230 Hb_000035_230 Hb_089140_070--Hb_000035_230 Hb_001971_040--Hb_006810_040 Hb_002028_270 Hb_002028_270 Hb_001971_040--Hb_002028_270 Hb_006693_010 Hb_006693_010 Hb_001971_040--Hb_006693_010 Hb_001971_040--Hb_010080_050 Hb_000020_050 Hb_000020_050 Hb_001971_040--Hb_000020_050 Hb_000089_090 Hb_000089_090 Hb_012092_040--Hb_000089_090 Hb_001247_060 Hb_001247_060 Hb_012092_040--Hb_001247_060 Hb_012092_040--Hb_000035_230 Hb_003464_010 Hb_003464_010 Hb_012092_040--Hb_003464_010 Hb_012092_040--Hb_000390_010 Hb_000522_160 Hb_000522_160 Hb_006810_040--Hb_000522_160 Hb_006810_040--Hb_002028_270 Hb_159809_040 Hb_159809_040 Hb_006810_040--Hb_159809_040 Hb_005332_030 Hb_005332_030 Hb_006810_040--Hb_005332_030 Hb_002307_150 Hb_002307_150 Hb_010080_050--Hb_002307_150 Hb_005211_170 Hb_005211_170 Hb_010080_050--Hb_005211_170 Hb_000445_260 Hb_000445_260 Hb_010080_050--Hb_000445_260 Hb_001856_210 Hb_001856_210 Hb_010080_050--Hb_001856_210 Hb_000390_010--Hb_003464_010 Hb_000390_010--Hb_000035_230 Hb_000390_010--Hb_001971_040 Hb_001950_090 Hb_001950_090 Hb_000390_010--Hb_001950_090 Hb_000035_230--Hb_001247_060 Hb_000035_230--Hb_000089_090 Hb_003847_060 Hb_003847_060 Hb_000035_230--Hb_003847_060 Hb_005398_050 Hb_005398_050 Hb_000035_230--Hb_005398_050 Hb_128392_010 Hb_128392_010 Hb_000035_230--Hb_128392_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.122489 2.34275 47.9794 59.7527 0.191714 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.130913 7.18106 3.18853

CAGE analysis