Hb_001247_060

Information

Type -
Description -
Location Contig1247: 38575-40530
Sequence    

Annotation

kegg
ID rcu:RCOM_1436070
description zinc finger protein, putative
nr
ID XP_002512551.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID O80522
description GDSL esterase/lipase At1g09390 OS=Arabidopsis thaliana GN=At1g09390 PE=2 SV=1
trembl
ID B9RFN2
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1436070 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at1g09390

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07472: 38627-40479
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_060 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_000089_090 0.043212558 - - hypothetical protein POPTR_0019s12670g [Populus trichocarpa]
3 Hb_012092_040 0.0612257228 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
4 Hb_000035_230 0.0670456441 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
5 Hb_059502_010 0.0883117565 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
6 Hb_007304_020 0.0995116041 - - PREDICTED: uncharacterized protein LOC100256879 [Vitis vinifera]
7 Hb_000531_010 0.1017077022 transcription factor TF Family: G2-like hypothetical protein POPTR_0018s14830g [Populus trichocarpa]
8 Hb_001205_290 0.1040567287 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP7-like [Jatropha curcas]
9 Hb_089140_070 0.10684441 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
10 Hb_128392_010 0.1100432421 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
11 Hb_000962_060 0.1113570706 - - PREDICTED: uncharacterized protein LOC105646517 [Jatropha curcas]
12 Hb_003464_010 0.1124144749 - - conserved hypothetical protein [Ricinus communis]
13 Hb_033312_100 0.1185159492 - - -
14 Hb_010589_090 0.1189249878 - - Snakin-1 [Glycine soja]
15 Hb_000390_010 0.1213812628 - - PREDICTED: protein CDI [Jatropha curcas]
16 Hb_009545_060 0.1240955544 - - PREDICTED: uncharacterized protein LOC105632005 [Jatropha curcas]
17 Hb_001123_330 0.1246852272 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
18 Hb_003847_060 0.1274985052 - - syntaxin, putative [Ricinus communis]
19 Hb_005701_100 0.1292290081 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
20 Hb_004598_020 0.1304445559 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]

Gene co-expression network

sample Hb_001247_060 Hb_001247_060 Hb_000089_090 Hb_000089_090 Hb_001247_060--Hb_000089_090 Hb_012092_040 Hb_012092_040 Hb_001247_060--Hb_012092_040 Hb_000035_230 Hb_000035_230 Hb_001247_060--Hb_000035_230 Hb_059502_010 Hb_059502_010 Hb_001247_060--Hb_059502_010 Hb_007304_020 Hb_007304_020 Hb_001247_060--Hb_007304_020 Hb_000531_010 Hb_000531_010 Hb_001247_060--Hb_000531_010 Hb_000089_090--Hb_012092_040 Hb_000089_090--Hb_000035_230 Hb_000089_090--Hb_059502_010 Hb_003464_010 Hb_003464_010 Hb_000089_090--Hb_003464_010 Hb_000962_060 Hb_000962_060 Hb_000089_090--Hb_000962_060 Hb_089140_070 Hb_089140_070 Hb_012092_040--Hb_089140_070 Hb_012092_040--Hb_000035_230 Hb_012092_040--Hb_003464_010 Hb_000390_010 Hb_000390_010 Hb_012092_040--Hb_000390_010 Hb_003847_060 Hb_003847_060 Hb_000035_230--Hb_003847_060 Hb_005398_050 Hb_005398_050 Hb_000035_230--Hb_005398_050 Hb_128392_010 Hb_128392_010 Hb_000035_230--Hb_128392_010 Hb_059502_010--Hb_000531_010 Hb_059502_010--Hb_007304_020 Hb_004598_020 Hb_004598_020 Hb_059502_010--Hb_004598_020 Hb_033312_100 Hb_033312_100 Hb_059502_010--Hb_033312_100 Hb_180864_010 Hb_180864_010 Hb_059502_010--Hb_180864_010 Hb_046204_010 Hb_046204_010 Hb_007304_020--Hb_046204_010 Hb_010589_090 Hb_010589_090 Hb_007304_020--Hb_010589_090 Hb_007304_020--Hb_000531_010 Hb_007304_020--Hb_033312_100 Hb_002025_280 Hb_002025_280 Hb_000531_010--Hb_002025_280 Hb_000531_010--Hb_033312_100 Hb_002766_070 Hb_002766_070 Hb_000531_010--Hb_002766_070 Hb_000531_010--Hb_180864_010 Hb_085600_010 Hb_085600_010 Hb_000531_010--Hb_085600_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0205649 0.2388 14.3918 18.5482 0.0330975 0.0341419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.29274 0.184634

CAGE analysis