Hb_004598_020

Information

Type transcription factor
Description TF Family: ERF
Location Contig4598: 25499-26047
Sequence    

Annotation

kegg
ID rcu:RCOM_1102060
description Transcriptional factor TINY, putative
nr
ID XP_002528041.1
description Transcriptional factor TINY, putative [Ricinus communis]
swissprot
ID Q9C9I8
description Ethylene-responsive transcription factor ERF020 OS=Arabidopsis thaliana GN=ERF020 PE=2 SV=1
trembl
ID B9SPX2
description Transcriptional factor TINY, putative OS=Ricinus communis GN=RCOM_1102060 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004598_020 0.0 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
2 Hb_003082_090 0.0504456083 - - hypothetical protein POPTR_0013s099451g, partial [Populus trichocarpa]
3 Hb_070266_010 0.0581693055 - - LRR.XII-like protein, partial [Platanus x acerifolia]
4 Hb_180864_010 0.0663343634 - - hypothetical protein B456_010G097000 [Gossypium raimondii]
5 Hb_002217_400 0.0700368162 - - polynucleotidyl transferase, ribonuclease H-like protein [Arabidopsis thaliana]
6 Hb_002267_110 0.0728832384 - - -
7 Hb_000028_450 0.0761408415 - - PREDICTED: monoglyceride lipase-like [Jatropha curcas]
8 Hb_059502_010 0.0805287258 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
9 Hb_001242_170 0.0875380746 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000531_010 0.0932815033 transcription factor TF Family: G2-like hypothetical protein POPTR_0018s14830g [Populus trichocarpa]
11 Hb_005357_040 0.0964339633 - - gibberellin 20-oxidase, putative [Ricinus communis]
12 Hb_000984_280 0.0969666598 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 [Jatropha curcas]
13 Hb_005389_030 0.0972198051 - - hypothetical protein VITISV_023348 [Vitis vinifera]
14 Hb_000732_200 0.0984712934 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000617_160 0.0984980135 - - -
16 Hb_085600_010 0.1003389666 - - PREDICTED: peroxidase 24-like [Jatropha curcas]
17 Hb_138585_070 0.1010338812 - - conserved hypothetical protein [Ricinus communis]
18 Hb_041332_010 0.1097819006 - - DNA binding protein, putative [Ricinus communis]
19 Hb_163989_010 0.1160460127 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002641_090 0.1182791635 - - PREDICTED: uncharacterized protein LOC105643559 [Jatropha curcas]

Gene co-expression network

sample Hb_004598_020 Hb_004598_020 Hb_003082_090 Hb_003082_090 Hb_004598_020--Hb_003082_090 Hb_070266_010 Hb_070266_010 Hb_004598_020--Hb_070266_010 Hb_180864_010 Hb_180864_010 Hb_004598_020--Hb_180864_010 Hb_002217_400 Hb_002217_400 Hb_004598_020--Hb_002217_400 Hb_002267_110 Hb_002267_110 Hb_004598_020--Hb_002267_110 Hb_000028_450 Hb_000028_450 Hb_004598_020--Hb_000028_450 Hb_003082_090--Hb_002217_400 Hb_003082_090--Hb_000028_450 Hb_005357_040 Hb_005357_040 Hb_003082_090--Hb_005357_040 Hb_005389_030 Hb_005389_030 Hb_003082_090--Hb_005389_030 Hb_000617_160 Hb_000617_160 Hb_003082_090--Hb_000617_160 Hb_070266_010--Hb_002267_110 Hb_041332_010 Hb_041332_010 Hb_070266_010--Hb_041332_010 Hb_070266_010--Hb_003082_090 Hb_070266_010--Hb_002217_400 Hb_070266_010--Hb_000028_450 Hb_001242_170 Hb_001242_170 Hb_180864_010--Hb_001242_170 Hb_085600_010 Hb_085600_010 Hb_180864_010--Hb_085600_010 Hb_000984_280 Hb_000984_280 Hb_180864_010--Hb_000984_280 Hb_000732_200 Hb_000732_200 Hb_180864_010--Hb_000732_200 Hb_180864_010--Hb_003082_090 Hb_002217_400--Hb_000028_450 Hb_002217_400--Hb_005357_040 Hb_002217_400--Hb_000617_160 Hb_138585_070 Hb_138585_070 Hb_002217_400--Hb_138585_070 Hb_002217_400--Hb_000732_200 Hb_002267_110--Hb_041332_010 Hb_002267_110--Hb_003082_090 Hb_001369_510 Hb_001369_510 Hb_002267_110--Hb_001369_510 Hb_033691_010 Hb_033691_010 Hb_002267_110--Hb_033691_010 Hb_000028_450--Hb_005357_040 Hb_000028_450--Hb_138585_070 Hb_000028_450--Hb_005389_030 Hb_000028_450--Hb_000617_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.194657 0.388306 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0374657 0

CAGE analysis