Hb_002267_110

Information

Type -
Description -
Location Contig2267: 92692-93307
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002267_110 0.0 - - -
2 Hb_070266_010 0.0147508695 - - LRR.XII-like protein, partial [Platanus x acerifolia]
3 Hb_041332_010 0.0376607478 - - DNA binding protein, putative [Ricinus communis]
4 Hb_004598_020 0.0728832384 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
5 Hb_003082_090 0.0880631832 - - hypothetical protein POPTR_0013s099451g, partial [Populus trichocarpa]
6 Hb_001369_510 0.0987737425 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
7 Hb_033691_010 0.1002777932 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
8 Hb_005389_030 0.1061026251 - - hypothetical protein VITISV_023348 [Vitis vinifera]
9 Hb_000028_450 0.10687667 - - PREDICTED: monoglyceride lipase-like [Jatropha curcas]
10 Hb_002217_400 0.1077726725 - - polynucleotidyl transferase, ribonuclease H-like protein [Arabidopsis thaliana]
11 Hb_002641_090 0.1094676159 - - PREDICTED: uncharacterized protein LOC105643559 [Jatropha curcas]
12 Hb_100953_010 0.1113471826 - - hypothetical protein JCGZ_10310 [Jatropha curcas]
13 Hb_163989_010 0.11785453 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005357_040 0.1215494071 - - gibberellin 20-oxidase, putative [Ricinus communis]
15 Hb_007138_010 0.1347672487 - - PREDICTED: putative laccase-9 [Jatropha curcas]
16 Hb_160479_010 0.1348516053 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
17 Hb_180864_010 0.1361571017 - - hypothetical protein B456_010G097000 [Gossypium raimondii]
18 Hb_138585_070 0.1371989455 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000617_160 0.138242601 - - -
20 Hb_059502_010 0.1384372667 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]

Gene co-expression network

sample Hb_002267_110 Hb_002267_110 Hb_070266_010 Hb_070266_010 Hb_002267_110--Hb_070266_010 Hb_041332_010 Hb_041332_010 Hb_002267_110--Hb_041332_010 Hb_004598_020 Hb_004598_020 Hb_002267_110--Hb_004598_020 Hb_003082_090 Hb_003082_090 Hb_002267_110--Hb_003082_090 Hb_001369_510 Hb_001369_510 Hb_002267_110--Hb_001369_510 Hb_033691_010 Hb_033691_010 Hb_002267_110--Hb_033691_010 Hb_070266_010--Hb_041332_010 Hb_070266_010--Hb_004598_020 Hb_070266_010--Hb_003082_090 Hb_002217_400 Hb_002217_400 Hb_070266_010--Hb_002217_400 Hb_000028_450 Hb_000028_450 Hb_070266_010--Hb_000028_450 Hb_041332_010--Hb_033691_010 Hb_041332_010--Hb_004598_020 Hb_041332_010--Hb_001369_510 Hb_051900_020 Hb_051900_020 Hb_041332_010--Hb_051900_020 Hb_004598_020--Hb_003082_090 Hb_180864_010 Hb_180864_010 Hb_004598_020--Hb_180864_010 Hb_004598_020--Hb_002217_400 Hb_004598_020--Hb_000028_450 Hb_003082_090--Hb_002217_400 Hb_003082_090--Hb_000028_450 Hb_005357_040 Hb_005357_040 Hb_003082_090--Hb_005357_040 Hb_005389_030 Hb_005389_030 Hb_003082_090--Hb_005389_030 Hb_000617_160 Hb_000617_160 Hb_003082_090--Hb_000617_160 Hb_100953_010 Hb_100953_010 Hb_001369_510--Hb_100953_010 Hb_007138_010 Hb_007138_010 Hb_001369_510--Hb_007138_010 Hb_001369_510--Hb_005389_030 Hb_001369_510--Hb_005357_040 Hb_001369_510--Hb_000028_450 Hb_001369_510--Hb_033691_010 Hb_160479_010 Hb_160479_010 Hb_033691_010--Hb_160479_010 Hb_010068_010 Hb_010068_010 Hb_033691_010--Hb_010068_010 Hb_033691_010--Hb_051900_020 Hb_000926_240 Hb_000926_240 Hb_033691_010--Hb_000926_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.512721 1.4253 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0833583 0

CAGE analysis