Hb_070266_010

Information

Type -
Description -
Location Contig70266: 201-1235
Sequence    

Annotation

kegg
ID mtr:MTR_5g026160
description Kinase-like protein
nr
ID AHZ44757.1
description LRR.XII-like protein, partial [Platanus x acerifolia]
swissprot
ID -
description -
trembl
ID A0A067ZYP8
description LRR.XII-like protein (Fragment) OS=Platanus acerifolia PE=2 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_070266_010 0.0 - - LRR.XII-like protein, partial [Platanus x acerifolia]
2 Hb_002267_110 0.0147508695 - - -
3 Hb_041332_010 0.0521903213 - - DNA binding protein, putative [Ricinus communis]
4 Hb_004598_020 0.0581693055 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
5 Hb_003082_090 0.0763646548 - - hypothetical protein POPTR_0013s099451g, partial [Populus trichocarpa]
6 Hb_002217_400 0.0968936908 - - polynucleotidyl transferase, ribonuclease H-like protein [Arabidopsis thaliana]
7 Hb_000028_450 0.0970196448 - - PREDICTED: monoglyceride lipase-like [Jatropha curcas]
8 Hb_001369_510 0.0998590845 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
9 Hb_005389_030 0.1000668876 - - hypothetical protein VITISV_023348 [Vitis vinifera]
10 Hb_002641_090 0.1073020581 - - PREDICTED: uncharacterized protein LOC105643559 [Jatropha curcas]
11 Hb_100953_010 0.1103772647 - - hypothetical protein JCGZ_10310 [Jatropha curcas]
12 Hb_033691_010 0.1114920656 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
13 Hb_005357_040 0.1131115853 - - gibberellin 20-oxidase, putative [Ricinus communis]
14 Hb_163989_010 0.1137047346 - - conserved hypothetical protein [Ricinus communis]
15 Hb_180864_010 0.1217960544 - - hypothetical protein B456_010G097000 [Gossypium raimondii]
16 Hb_059502_010 0.1256686776 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
17 Hb_138585_070 0.12733923 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000617_160 0.1278439136 - - -
19 Hb_007138_010 0.1328068445 - - PREDICTED: putative laccase-9 [Jatropha curcas]
20 Hb_000732_200 0.1341778592 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_070266_010 Hb_070266_010 Hb_002267_110 Hb_002267_110 Hb_070266_010--Hb_002267_110 Hb_041332_010 Hb_041332_010 Hb_070266_010--Hb_041332_010 Hb_004598_020 Hb_004598_020 Hb_070266_010--Hb_004598_020 Hb_003082_090 Hb_003082_090 Hb_070266_010--Hb_003082_090 Hb_002217_400 Hb_002217_400 Hb_070266_010--Hb_002217_400 Hb_000028_450 Hb_000028_450 Hb_070266_010--Hb_000028_450 Hb_002267_110--Hb_041332_010 Hb_002267_110--Hb_004598_020 Hb_002267_110--Hb_003082_090 Hb_001369_510 Hb_001369_510 Hb_002267_110--Hb_001369_510 Hb_033691_010 Hb_033691_010 Hb_002267_110--Hb_033691_010 Hb_041332_010--Hb_033691_010 Hb_041332_010--Hb_004598_020 Hb_041332_010--Hb_001369_510 Hb_051900_020 Hb_051900_020 Hb_041332_010--Hb_051900_020 Hb_004598_020--Hb_003082_090 Hb_180864_010 Hb_180864_010 Hb_004598_020--Hb_180864_010 Hb_004598_020--Hb_002217_400 Hb_004598_020--Hb_000028_450 Hb_003082_090--Hb_002217_400 Hb_003082_090--Hb_000028_450 Hb_005357_040 Hb_005357_040 Hb_003082_090--Hb_005357_040 Hb_005389_030 Hb_005389_030 Hb_003082_090--Hb_005389_030 Hb_000617_160 Hb_000617_160 Hb_003082_090--Hb_000617_160 Hb_002217_400--Hb_000028_450 Hb_002217_400--Hb_005357_040 Hb_002217_400--Hb_000617_160 Hb_138585_070 Hb_138585_070 Hb_002217_400--Hb_138585_070 Hb_000732_200 Hb_000732_200 Hb_002217_400--Hb_000732_200 Hb_000028_450--Hb_005357_040 Hb_000028_450--Hb_138585_070 Hb_000028_450--Hb_005389_030 Hb_000028_450--Hb_000617_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.84233 4.78621 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.31221 0

CAGE analysis