Hb_041332_010

Information

Type -
Description -
Location Contig41332: 924-1088
Sequence    

Annotation

kegg
ID rcu:RCOM_1514750
description DNA binding protein, putative
nr
ID XP_002511555.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R980
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1514750 PE=4 SV=1
Gene Ontology
ID GO:0046983
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041332_010 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_002267_110 0.0376607478 - - -
3 Hb_070266_010 0.0521903213 - - LRR.XII-like protein, partial [Platanus x acerifolia]
4 Hb_033691_010 0.0836831807 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
5 Hb_004598_020 0.1097819006 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
6 Hb_001369_510 0.1116734897 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
7 Hb_051900_020 0.1135583281 - - JHL22C18.7 [Jatropha curcas]
8 Hb_160479_010 0.1172626541 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
9 Hb_003082_090 0.1230051584 - - hypothetical protein POPTR_0013s099451g, partial [Populus trichocarpa]
10 Hb_126871_010 0.1231138485 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
11 Hb_000172_040 0.1231140158 - - Tetratricopeptide repeat protein, putative [Ricinus communis]
12 Hb_009615_140 0.1231146538 - - PREDICTED: alpha-galactosidase-like isoform X2 [Pyrus x bretschneideri]
13 Hb_039046_010 0.1231317858 - - PREDICTED: uncharacterized protein LOC105644040 isoform X2 [Jatropha curcas]
14 Hb_006111_050 0.1231356927 transcription factor TF Family: AP2 Protein AINTEGUMENTA, putative [Ricinus communis]
15 Hb_004881_090 0.1232886882 - - hypothetical protein POPTR_0002s06050g [Populus trichocarpa]
16 Hb_004324_180 0.1233291969 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_008895_010 0.1234150798 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000834_120 0.1234442777 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
19 Hb_000373_090 0.1235524131 - - PREDICTED: abscisic acid 8'-hydroxylase 3-like [Prunus mume]
20 Hb_003486_040 0.1235812826 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_041332_010 Hb_041332_010 Hb_002267_110 Hb_002267_110 Hb_041332_010--Hb_002267_110 Hb_070266_010 Hb_070266_010 Hb_041332_010--Hb_070266_010 Hb_033691_010 Hb_033691_010 Hb_041332_010--Hb_033691_010 Hb_004598_020 Hb_004598_020 Hb_041332_010--Hb_004598_020 Hb_001369_510 Hb_001369_510 Hb_041332_010--Hb_001369_510 Hb_051900_020 Hb_051900_020 Hb_041332_010--Hb_051900_020 Hb_002267_110--Hb_070266_010 Hb_002267_110--Hb_004598_020 Hb_003082_090 Hb_003082_090 Hb_002267_110--Hb_003082_090 Hb_002267_110--Hb_001369_510 Hb_002267_110--Hb_033691_010 Hb_070266_010--Hb_004598_020 Hb_070266_010--Hb_003082_090 Hb_002217_400 Hb_002217_400 Hb_070266_010--Hb_002217_400 Hb_000028_450 Hb_000028_450 Hb_070266_010--Hb_000028_450 Hb_160479_010 Hb_160479_010 Hb_033691_010--Hb_160479_010 Hb_010068_010 Hb_010068_010 Hb_033691_010--Hb_010068_010 Hb_033691_010--Hb_051900_020 Hb_000926_240 Hb_000926_240 Hb_033691_010--Hb_000926_240 Hb_033691_010--Hb_001369_510 Hb_004598_020--Hb_003082_090 Hb_180864_010 Hb_180864_010 Hb_004598_020--Hb_180864_010 Hb_004598_020--Hb_002217_400 Hb_004598_020--Hb_000028_450 Hb_100953_010 Hb_100953_010 Hb_001369_510--Hb_100953_010 Hb_007138_010 Hb_007138_010 Hb_001369_510--Hb_007138_010 Hb_005389_030 Hb_005389_030 Hb_001369_510--Hb_005389_030 Hb_005357_040 Hb_005357_040 Hb_001369_510--Hb_005357_040 Hb_001369_510--Hb_000028_450 Hb_051900_020--Hb_160479_010 Hb_051900_020--Hb_010068_010 Hb_002235_330 Hb_002235_330 Hb_051900_020--Hb_002235_330 Hb_000566_060 Hb_000566_060 Hb_051900_020--Hb_000566_060 Hb_004317_020 Hb_004317_020 Hb_051900_020--Hb_004317_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 11.4028 36.8926 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.49289 0

CAGE analysis