Hb_002235_330

Information

Type -
Description -
Location Contig2235: 294583-295860
Sequence    

Annotation

kegg
ID rcu:RCOM_0299840
description Alpha-expansin 5 precursor, putative
nr
ID XP_012084718.1
description PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
swissprot
ID Q38864
description Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1
trembl
ID A0A067JWH4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19862 PE=3 SV=1
Gene Ontology
ID GO:0005576
description expansin s1 precursor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_330 0.0 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
2 Hb_051900_020 0.0745647685 - - JHL22C18.7 [Jatropha curcas]
3 Hb_160479_010 0.1032038395 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
4 Hb_010068_010 0.105293343 - - PREDICTED: uncharacterized protein LOC105633273 [Jatropha curcas]
5 Hb_033691_010 0.1056281251 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
6 Hb_000566_060 0.109737515 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004317_020 0.1154354589 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7-like [Malus domestica]
8 Hb_000926_240 0.1267053589 - - hypothetical protein PRUPE_ppb018041mg [Prunus persica]
9 Hb_036116_010 0.1274104 - - JHL22C18.10 [Jatropha curcas]
10 Hb_090521_010 0.1274192079 - - Major allergen Pru ar, putative [Ricinus communis]
11 Hb_000471_130 0.1274720331 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002217_010 0.127502722 - - Peroxiredoxin, putative [Ricinus communis]
13 Hb_002157_110 0.1275293318 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
14 Hb_004899_240 0.1276971238 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001002_010 0.1277817057 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006663_120 0.1278782382 - - ATP binding protein, putative [Ricinus communis]
17 Hb_000679_180 0.1279037602 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
18 Hb_007227_020 0.1279409107 - - -
19 Hb_005333_090 0.1279576635 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
20 Hb_003038_020 0.1280293593 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_002235_330 Hb_002235_330 Hb_051900_020 Hb_051900_020 Hb_002235_330--Hb_051900_020 Hb_160479_010 Hb_160479_010 Hb_002235_330--Hb_160479_010 Hb_010068_010 Hb_010068_010 Hb_002235_330--Hb_010068_010 Hb_033691_010 Hb_033691_010 Hb_002235_330--Hb_033691_010 Hb_000566_060 Hb_000566_060 Hb_002235_330--Hb_000566_060 Hb_004317_020 Hb_004317_020 Hb_002235_330--Hb_004317_020 Hb_051900_020--Hb_160479_010 Hb_051900_020--Hb_010068_010 Hb_051900_020--Hb_033691_010 Hb_051900_020--Hb_000566_060 Hb_051900_020--Hb_004317_020 Hb_160479_010--Hb_010068_010 Hb_160479_010--Hb_033691_010 Hb_000926_240 Hb_000926_240 Hb_160479_010--Hb_000926_240 Hb_160479_010--Hb_004317_020 Hb_000935_060 Hb_000935_060 Hb_160479_010--Hb_000935_060 Hb_010068_010--Hb_000926_240 Hb_010068_010--Hb_033691_010 Hb_010068_010--Hb_004317_020 Hb_010068_010--Hb_000566_060 Hb_033691_010--Hb_000926_240 Hb_001369_510 Hb_001369_510 Hb_033691_010--Hb_001369_510 Hb_041332_010 Hb_041332_010 Hb_033691_010--Hb_041332_010 Hb_000566_060--Hb_004317_020 Hb_034858_010 Hb_034858_010 Hb_000566_060--Hb_034858_010 Hb_000566_060--Hb_000926_240 Hb_000566_060--Hb_160479_010 Hb_004317_020--Hb_034858_010 Hb_004317_020--Hb_000926_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0172757 2.63228 17.1142 0.0777861 0.0182644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0373468 0.0689719 0.435013 0

CAGE analysis