Hb_000566_060

Information

Type -
Description -
Location Contig566: 57561-58504
Sequence    

Annotation

kegg
ID rcu:RCOM_1079240
description hypothetical protein
nr
ID XP_002514882.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMB3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1079240 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49039: 57955-58471
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000566_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004317_020 0.0160959086 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7-like [Malus domestica]
3 Hb_034858_010 0.0499753978 - - -
4 Hb_010068_010 0.0686924718 - - PREDICTED: uncharacterized protein LOC105633273 [Jatropha curcas]
5 Hb_051900_020 0.0756517349 - - JHL22C18.7 [Jatropha curcas]
6 Hb_000926_240 0.0781736463 - - hypothetical protein PRUPE_ppb018041mg [Prunus persica]
7 Hb_160479_010 0.086859845 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
8 Hb_000740_140 0.1030481856 transcription factor TF Family: OFP PREDICTED: probable transcription repressor OFP9 [Jatropha curcas]
9 Hb_002235_330 0.109737515 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
10 Hb_005348_020 0.1137191946 - - conserved hypothetical protein [Ricinus communis]
11 Hb_033691_010 0.1162441128 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
12 Hb_002028_250 0.1184029466 - - Alpha-aminoadipic semialdehyde synthase, mitochondrial [Crassostrea gigas]
13 Hb_000622_140 0.1200330922 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000269_050 0.1219696126 - - PREDICTED: beta-glucosidase 12-like [Gossypium raimondii]
15 Hb_000375_210 0.1253450919 - - -
16 Hb_000325_090 0.1324707539 transcription factor TF Family: bHLH PREDICTED: transcription factor PRE5-like [Gossypium raimondii]
17 Hb_005914_190 0.133347383 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
18 Hb_010261_070 0.1333552729 - - hypothetical protein B456_009G094800 [Gossypium raimondii]
19 Hb_099538_020 0.1334106058 - - hypothetical protein POPTR_0010s12650g [Populus trichocarpa]
20 Hb_003874_030 0.1336188024 - - hypothetical protein JCGZ_00004 [Jatropha curcas]

Gene co-expression network

sample Hb_000566_060 Hb_000566_060 Hb_004317_020 Hb_004317_020 Hb_000566_060--Hb_004317_020 Hb_034858_010 Hb_034858_010 Hb_000566_060--Hb_034858_010 Hb_010068_010 Hb_010068_010 Hb_000566_060--Hb_010068_010 Hb_051900_020 Hb_051900_020 Hb_000566_060--Hb_051900_020 Hb_000926_240 Hb_000926_240 Hb_000566_060--Hb_000926_240 Hb_160479_010 Hb_160479_010 Hb_000566_060--Hb_160479_010 Hb_004317_020--Hb_034858_010 Hb_004317_020--Hb_010068_010 Hb_004317_020--Hb_000926_240 Hb_004317_020--Hb_160479_010 Hb_004317_020--Hb_051900_020 Hb_000740_140 Hb_000740_140 Hb_034858_010--Hb_000740_140 Hb_005348_020 Hb_005348_020 Hb_034858_010--Hb_005348_020 Hb_034858_010--Hb_000926_240 Hb_034858_010--Hb_010068_010 Hb_010068_010--Hb_160479_010 Hb_010068_010--Hb_000926_240 Hb_033691_010 Hb_033691_010 Hb_010068_010--Hb_033691_010 Hb_010068_010--Hb_051900_020 Hb_051900_020--Hb_160479_010 Hb_051900_020--Hb_033691_010 Hb_002235_330 Hb_002235_330 Hb_051900_020--Hb_002235_330 Hb_000926_240--Hb_160479_010 Hb_000935_060 Hb_000935_060 Hb_000926_240--Hb_000935_060 Hb_004102_150 Hb_004102_150 Hb_000926_240--Hb_004102_150 Hb_160479_010--Hb_033691_010 Hb_160479_010--Hb_000935_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0516574 0.600804 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0237386 0

CAGE analysis