Hb_004102_150

Information

Type -
Description -
Location Contig4102: 96513-97019
Sequence    

Annotation

kegg
ID rcu:RCOM_0898000
description Late embryogenesis abundant protein D-7, putative
nr
ID XP_002517584.1
description Late embryogenesis abundant protein D-7, putative [Ricinus communis]
swissprot
ID P13939
description Late embryogenesis abundant protein D-7 OS=Gossypium hirsutum PE=2 SV=1
trembl
ID B9RV15
description Late embryogenesis abundant protein D-7, putative OS=Ricinus communis GN=RCOM_0898000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004102_150 0.0 - - Late embryogenesis abundant protein D-7, putative [Ricinus communis]
2 Hb_000935_060 0.0129948571 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8-like [Jatropha curcas]
3 Hb_000917_070 0.0578586972 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000926_240 0.0625249461 - - hypothetical protein PRUPE_ppb018041mg [Prunus persica]
5 Hb_005144_140 0.0627651636 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010068_010 0.0870346845 - - PREDICTED: uncharacterized protein LOC105633273 [Jatropha curcas]
7 Hb_005348_020 0.0881873496 - - conserved hypothetical protein [Ricinus communis]
8 Hb_160479_010 0.0907734202 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
9 Hb_073870_010 0.0938068115 - - hypothetical protein RCOM_0725510 [Ricinus communis]
10 Hb_007138_010 0.102872295 - - PREDICTED: putative laccase-9 [Jatropha curcas]
11 Hb_001369_510 0.1029290284 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
12 Hb_100953_010 0.105290329 - - hypothetical protein JCGZ_10310 [Jatropha curcas]
13 Hb_000740_140 0.1075425698 transcription factor TF Family: OFP PREDICTED: probable transcription repressor OFP9 [Jatropha curcas]
14 Hb_033691_010 0.1102971033 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
15 Hb_034858_010 0.1150789098 - - -
16 Hb_001404_060 0.1151831107 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
17 Hb_004317_020 0.1227312189 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7-like [Malus domestica]
18 Hb_006275_040 0.1299126621 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
19 Hb_000320_240 0.136566413 - - multicopper oxidase, putative [Ricinus communis]
20 Hb_000566_060 0.1369317749 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004102_150 Hb_004102_150 Hb_000935_060 Hb_000935_060 Hb_004102_150--Hb_000935_060 Hb_000917_070 Hb_000917_070 Hb_004102_150--Hb_000917_070 Hb_000926_240 Hb_000926_240 Hb_004102_150--Hb_000926_240 Hb_005144_140 Hb_005144_140 Hb_004102_150--Hb_005144_140 Hb_010068_010 Hb_010068_010 Hb_004102_150--Hb_010068_010 Hb_005348_020 Hb_005348_020 Hb_004102_150--Hb_005348_020 Hb_000935_060--Hb_000926_240 Hb_000935_060--Hb_000917_070 Hb_000935_060--Hb_005144_140 Hb_000935_060--Hb_010068_010 Hb_160479_010 Hb_160479_010 Hb_000935_060--Hb_160479_010 Hb_000917_070--Hb_005144_140 Hb_000917_070--Hb_005348_020 Hb_006275_040 Hb_006275_040 Hb_000917_070--Hb_006275_040 Hb_000740_140 Hb_000740_140 Hb_000917_070--Hb_000740_140 Hb_000926_240--Hb_010068_010 Hb_000926_240--Hb_160479_010 Hb_004317_020 Hb_004317_020 Hb_000926_240--Hb_004317_020 Hb_034858_010 Hb_034858_010 Hb_000926_240--Hb_034858_010 Hb_005144_140--Hb_006275_040 Hb_073870_010 Hb_073870_010 Hb_005144_140--Hb_073870_010 Hb_005144_140--Hb_005348_020 Hb_010068_010--Hb_160479_010 Hb_033691_010 Hb_033691_010 Hb_010068_010--Hb_033691_010 Hb_010068_010--Hb_004317_020 Hb_051900_020 Hb_051900_020 Hb_010068_010--Hb_051900_020 Hb_000566_060 Hb_000566_060 Hb_010068_010--Hb_000566_060 Hb_005348_020--Hb_000740_140 Hb_005348_020--Hb_034858_010 Hb_005348_020--Hb_000926_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0840744 0.61906 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0867674 0

CAGE analysis