Hb_005348_020

Information

Type -
Description -
Location Contig5348: 17732-18070
Sequence    

Annotation

kegg
ID rcu:RCOM_0709080
description hypothetical protein
nr
ID XP_002516213.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LTV3
description Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana GN=SAUR72 PE=2 SV=1
trembl
ID B9RR44
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0709080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47507: 17584-18075
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005348_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000740_140 0.0237079209 transcription factor TF Family: OFP PREDICTED: probable transcription repressor OFP9 [Jatropha curcas]
3 Hb_034858_010 0.0669510673 - - -
4 Hb_000917_070 0.0805903702 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000926_240 0.0871300654 - - hypothetical protein PRUPE_ppb018041mg [Prunus persica]
6 Hb_004102_150 0.0881873496 - - Late embryogenesis abundant protein D-7, putative [Ricinus communis]
7 Hb_005144_140 0.097553813 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000935_060 0.0983306894 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8-like [Jatropha curcas]
9 Hb_004317_020 0.0989803975 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7-like [Malus domestica]
10 Hb_010068_010 0.112546929 - - PREDICTED: uncharacterized protein LOC105633273 [Jatropha curcas]
11 Hb_000566_060 0.1137191946 - - conserved hypothetical protein [Ricinus communis]
12 Hb_160479_010 0.1303054336 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
13 Hb_003494_100 0.1386961649 transcription factor TF Family: zf-HD Mini zinc finger 2 isoform 1 [Theobroma cacao]
14 Hb_159012_010 0.1421061551 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 [Jatropha curcas]
15 Hb_000194_030 0.1447554186 transcription factor TF Family: NAC NAC transcription factor 059 [Jatropha curcas]
16 Hb_039946_040 0.1473777696 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
17 Hb_004926_010 0.1477799221 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
18 Hb_001091_040 0.1497134227 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
19 Hb_093084_040 0.1511269482 transcription factor TF Family: LOB hypothetical protein POPTR_0015s09370g [Populus trichocarpa]
20 Hb_006275_040 0.1590143662 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]

Gene co-expression network

sample Hb_005348_020 Hb_005348_020 Hb_000740_140 Hb_000740_140 Hb_005348_020--Hb_000740_140 Hb_034858_010 Hb_034858_010 Hb_005348_020--Hb_034858_010 Hb_000917_070 Hb_000917_070 Hb_005348_020--Hb_000917_070 Hb_000926_240 Hb_000926_240 Hb_005348_020--Hb_000926_240 Hb_004102_150 Hb_004102_150 Hb_005348_020--Hb_004102_150 Hb_005144_140 Hb_005144_140 Hb_005348_020--Hb_005144_140 Hb_000740_140--Hb_034858_010 Hb_004317_020 Hb_004317_020 Hb_000740_140--Hb_004317_020 Hb_000740_140--Hb_000926_240 Hb_000566_060 Hb_000566_060 Hb_000740_140--Hb_000566_060 Hb_000740_140--Hb_000917_070 Hb_034858_010--Hb_004317_020 Hb_034858_010--Hb_000566_060 Hb_034858_010--Hb_000926_240 Hb_010068_010 Hb_010068_010 Hb_034858_010--Hb_010068_010 Hb_000917_070--Hb_005144_140 Hb_000917_070--Hb_004102_150 Hb_000935_060 Hb_000935_060 Hb_000917_070--Hb_000935_060 Hb_006275_040 Hb_006275_040 Hb_000917_070--Hb_006275_040 Hb_000926_240--Hb_010068_010 Hb_160479_010 Hb_160479_010 Hb_000926_240--Hb_160479_010 Hb_000926_240--Hb_000935_060 Hb_000926_240--Hb_004102_150 Hb_000926_240--Hb_004317_020 Hb_004102_150--Hb_000935_060 Hb_004102_150--Hb_005144_140 Hb_004102_150--Hb_010068_010 Hb_005144_140--Hb_006275_040 Hb_005144_140--Hb_000935_060 Hb_073870_010 Hb_073870_010 Hb_005144_140--Hb_073870_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.482806 7.72994 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.889615 0

CAGE analysis