Hb_000917_070

Information

Type -
Description -
Location Contig917: 37148-37714
Sequence    

Annotation

kegg
ID rcu:RCOM_0581550
description hypothetical protein
nr
ID XP_002525296.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SZG3
description VQ motif-containing protein 29 OS=Arabidopsis thaliana GN=VQ29 PE=2 SV=1
trembl
ID B9SH27
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0581550 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000917_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005144_140 0.0170879385 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004102_150 0.0578586972 - - Late embryogenesis abundant protein D-7, putative [Ricinus communis]
4 Hb_000935_060 0.0699573011 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8-like [Jatropha curcas]
5 Hb_005348_020 0.0805903702 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006275_040 0.0845473381 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
7 Hb_000740_140 0.104114017 transcription factor TF Family: OFP PREDICTED: probable transcription repressor OFP9 [Jatropha curcas]
8 Hb_073870_010 0.1074546176 - - hypothetical protein RCOM_0725510 [Ricinus communis]
9 Hb_000926_240 0.1091766907 - - hypothetical protein PRUPE_ppb018041mg [Prunus persica]
10 Hb_030088_010 0.1222544273 - - basic blue copper family protein [Populus trichocarpa]
11 Hb_001404_060 0.1252394452 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_003057_040 0.1282791313 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
13 Hb_034858_010 0.135349101 - - -
14 Hb_010068_010 0.1368793218 - - PREDICTED: uncharacterized protein LOC105633273 [Jatropha curcas]
15 Hb_039946_040 0.138359594 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
16 Hb_007138_010 0.1389334356 - - PREDICTED: putative laccase-9 [Jatropha curcas]
17 Hb_001300_060 0.1413685288 - - PREDICTED: monothiol glutaredoxin-S6-like [Jatropha curcas]
18 Hb_160479_010 0.1448763753 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
19 Hb_100953_010 0.1493684496 - - hypothetical protein JCGZ_10310 [Jatropha curcas]
20 Hb_006103_050 0.1502783559 - - -

Gene co-expression network

sample Hb_000917_070 Hb_000917_070 Hb_005144_140 Hb_005144_140 Hb_000917_070--Hb_005144_140 Hb_004102_150 Hb_004102_150 Hb_000917_070--Hb_004102_150 Hb_000935_060 Hb_000935_060 Hb_000917_070--Hb_000935_060 Hb_005348_020 Hb_005348_020 Hb_000917_070--Hb_005348_020 Hb_006275_040 Hb_006275_040 Hb_000917_070--Hb_006275_040 Hb_000740_140 Hb_000740_140 Hb_000917_070--Hb_000740_140 Hb_005144_140--Hb_004102_150 Hb_005144_140--Hb_006275_040 Hb_005144_140--Hb_000935_060 Hb_073870_010 Hb_073870_010 Hb_005144_140--Hb_073870_010 Hb_005144_140--Hb_005348_020 Hb_004102_150--Hb_000935_060 Hb_000926_240 Hb_000926_240 Hb_004102_150--Hb_000926_240 Hb_010068_010 Hb_010068_010 Hb_004102_150--Hb_010068_010 Hb_004102_150--Hb_005348_020 Hb_000935_060--Hb_000926_240 Hb_000935_060--Hb_010068_010 Hb_160479_010 Hb_160479_010 Hb_000935_060--Hb_160479_010 Hb_005348_020--Hb_000740_140 Hb_034858_010 Hb_034858_010 Hb_005348_020--Hb_034858_010 Hb_005348_020--Hb_000926_240 Hb_001300_060 Hb_001300_060 Hb_006275_040--Hb_001300_060 Hb_003057_040 Hb_003057_040 Hb_006275_040--Hb_003057_040 Hb_010308_010 Hb_010308_010 Hb_006275_040--Hb_010308_010 Hb_023714_010 Hb_023714_010 Hb_006275_040--Hb_023714_010 Hb_000740_140--Hb_034858_010 Hb_004317_020 Hb_004317_020 Hb_000740_140--Hb_004317_020 Hb_000740_140--Hb_000926_240 Hb_000566_060 Hb_000566_060 Hb_000740_140--Hb_000566_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0384212 0.378047 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.071135 0

CAGE analysis