Hb_034858_010

Information

Type -
Description -
Location Contig34858: 1385-2659
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034858_010 0.0 - - -
2 Hb_004317_020 0.0372198647 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7-like [Malus domestica]
3 Hb_000566_060 0.0499753978 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000740_140 0.0537071284 transcription factor TF Family: OFP PREDICTED: probable transcription repressor OFP9 [Jatropha curcas]
5 Hb_005348_020 0.0669510673 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000926_240 0.0712326667 - - hypothetical protein PRUPE_ppb018041mg [Prunus persica]
7 Hb_010068_010 0.0808905826 - - PREDICTED: uncharacterized protein LOC105633273 [Jatropha curcas]
8 Hb_160479_010 0.1023478351 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
9 Hb_004102_150 0.1150789098 - - Late embryogenesis abundant protein D-7, putative [Ricinus communis]
10 Hb_051900_020 0.1166788184 - - JHL22C18.7 [Jatropha curcas]
11 Hb_000935_060 0.1189843172 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8-like [Jatropha curcas]
12 Hb_000269_050 0.1219651778 - - PREDICTED: beta-glucosidase 12-like [Gossypium raimondii]
13 Hb_000622_140 0.1234813787 - - conserved hypothetical protein [Ricinus communis]
14 Hb_093084_040 0.1273048725 transcription factor TF Family: LOB hypothetical protein POPTR_0015s09370g [Populus trichocarpa]
15 Hb_000917_070 0.135349101 - - conserved hypothetical protein [Ricinus communis]
16 Hb_033691_010 0.1364144358 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
17 Hb_003058_090 0.1376181814 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
18 Hb_002235_330 0.1448630119 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
19 Hb_000366_070 0.1457238988 - - PREDICTED: protein NRT1/ PTR FAMILY 6.2 [Jatropha curcas]
20 Hb_005144_140 0.1508037794 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_034858_010 Hb_034858_010 Hb_004317_020 Hb_004317_020 Hb_034858_010--Hb_004317_020 Hb_000566_060 Hb_000566_060 Hb_034858_010--Hb_000566_060 Hb_000740_140 Hb_000740_140 Hb_034858_010--Hb_000740_140 Hb_005348_020 Hb_005348_020 Hb_034858_010--Hb_005348_020 Hb_000926_240 Hb_000926_240 Hb_034858_010--Hb_000926_240 Hb_010068_010 Hb_010068_010 Hb_034858_010--Hb_010068_010 Hb_004317_020--Hb_000566_060 Hb_004317_020--Hb_010068_010 Hb_004317_020--Hb_000926_240 Hb_160479_010 Hb_160479_010 Hb_004317_020--Hb_160479_010 Hb_051900_020 Hb_051900_020 Hb_004317_020--Hb_051900_020 Hb_000566_060--Hb_010068_010 Hb_000566_060--Hb_051900_020 Hb_000566_060--Hb_000926_240 Hb_000566_060--Hb_160479_010 Hb_000740_140--Hb_005348_020 Hb_000740_140--Hb_004317_020 Hb_000740_140--Hb_000926_240 Hb_000740_140--Hb_000566_060 Hb_000917_070 Hb_000917_070 Hb_000740_140--Hb_000917_070 Hb_005348_020--Hb_000917_070 Hb_005348_020--Hb_000926_240 Hb_004102_150 Hb_004102_150 Hb_005348_020--Hb_004102_150 Hb_005144_140 Hb_005144_140 Hb_005348_020--Hb_005144_140 Hb_000926_240--Hb_010068_010 Hb_000926_240--Hb_160479_010 Hb_000935_060 Hb_000935_060 Hb_000926_240--Hb_000935_060 Hb_000926_240--Hb_004102_150 Hb_010068_010--Hb_160479_010 Hb_033691_010 Hb_033691_010 Hb_010068_010--Hb_033691_010 Hb_010068_010--Hb_051900_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0258153 0.380091 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.024197 0

CAGE analysis