Hb_001300_060

Information

Type -
Description -
Location Contig1300: 45443-45757
Sequence    

Annotation

kegg
ID rcu:RCOM_0555550
description glutaredoxin, grx, putative
nr
ID XP_012082683.1
description PREDICTED: monothiol glutaredoxin-S6-like [Jatropha curcas]
swissprot
ID Q9LYC8
description Monothiol glutaredoxin-S6 OS=Arabidopsis thaliana GN=GRXS6 PE=3 SV=1
trembl
ID A0A067JW19
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13868 PE=4 SV=1
Gene Ontology
ID GO:0009055
description monothiol glutaredoxin-s6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08961: 45356-45705
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001300_060 0.0 - - PREDICTED: monothiol glutaredoxin-S6-like [Jatropha curcas]
2 Hb_010308_010 0.0337028968 - - hypothetical protein JCGZ_22818 [Jatropha curcas]
3 Hb_000496_080 0.0342165881 - - Proteinase inhibitor, putative [Ricinus communis]
4 Hb_004330_050 0.0374911395 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000329_570 0.03995332 - - -
6 Hb_020112_010 0.0460393135 - - acyltransferase, putative [Ricinus communis]
7 Hb_006275_040 0.0645210781 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
8 Hb_004785_150 0.0929052247 - - hypothetical protein JCGZ_25207 [Jatropha curcas]
9 Hb_000743_070 0.0955354647 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
10 Hb_023714_010 0.107573514 - - hypothetical protein B456_007G377100 [Gossypium raimondii]
11 Hb_001404_060 0.112669255 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_006103_050 0.1130751865 - - -
13 Hb_073870_010 0.1194700787 - - hypothetical protein RCOM_0725510 [Ricinus communis]
14 Hb_003057_040 0.1232190517 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
15 Hb_001863_520 0.1235241683 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005144_140 0.1252954129 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000127_050 0.133294557 - - -
18 Hb_005551_070 0.1378445439 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
19 Hb_000917_070 0.1413685288 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004208_020 0.1523552033 - - phosphoglycerate kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001300_060 Hb_001300_060 Hb_010308_010 Hb_010308_010 Hb_001300_060--Hb_010308_010 Hb_000496_080 Hb_000496_080 Hb_001300_060--Hb_000496_080 Hb_004330_050 Hb_004330_050 Hb_001300_060--Hb_004330_050 Hb_000329_570 Hb_000329_570 Hb_001300_060--Hb_000329_570 Hb_020112_010 Hb_020112_010 Hb_001300_060--Hb_020112_010 Hb_006275_040 Hb_006275_040 Hb_001300_060--Hb_006275_040 Hb_010308_010--Hb_000496_080 Hb_010308_010--Hb_004330_050 Hb_010308_010--Hb_020112_010 Hb_010308_010--Hb_000329_570 Hb_000743_070 Hb_000743_070 Hb_010308_010--Hb_000743_070 Hb_000496_080--Hb_004330_050 Hb_000496_080--Hb_020112_010 Hb_000496_080--Hb_000329_570 Hb_000496_080--Hb_000743_070 Hb_004330_050--Hb_020112_010 Hb_004330_050--Hb_000329_570 Hb_004330_050--Hb_000743_070 Hb_000329_570--Hb_020112_010 Hb_004785_150 Hb_004785_150 Hb_000329_570--Hb_004785_150 Hb_020112_010--Hb_000743_070 Hb_005144_140 Hb_005144_140 Hb_006275_040--Hb_005144_140 Hb_003057_040 Hb_003057_040 Hb_006275_040--Hb_003057_040 Hb_000917_070 Hb_000917_070 Hb_006275_040--Hb_000917_070 Hb_006275_040--Hb_010308_010 Hb_023714_010 Hb_023714_010 Hb_006275_040--Hb_023714_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.343587 1.989 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.840624 0

CAGE analysis