Hb_020112_010

Information

Type -
Description -
Location Contig20112: 310-1109
Sequence    

Annotation

kegg
ID rcu:RCOM_0834670
description acyltransferase, putative
nr
ID XP_002532420.1
description acyltransferase, putative [Ricinus communis]
swissprot
ID Q9SV07
description Acyl-CoA--sterol O-acyltransferase 1 OS=Arabidopsis thaliana GN=ASAT1 PE=1 SV=1
trembl
ID B9T2F1
description Acyltransferase, putative OS=Ricinus communis GN=RCOM_0834670 PE=4 SV=1
Gene Ontology
ID GO:0047196
description acyl- --sterol o-acyltransferase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020112_010 0.0 - - acyltransferase, putative [Ricinus communis]
2 Hb_000496_080 0.0176387648 - - Proteinase inhibitor, putative [Ricinus communis]
3 Hb_010308_010 0.0188115673 - - hypothetical protein JCGZ_22818 [Jatropha curcas]
4 Hb_004330_050 0.0216273909 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001300_060 0.0460393135 - - PREDICTED: monothiol glutaredoxin-S6-like [Jatropha curcas]
6 Hb_000329_570 0.0512681437 - - -
7 Hb_000743_070 0.0534752934 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
8 Hb_004785_150 0.0780027883 - - hypothetical protein JCGZ_25207 [Jatropha curcas]
9 Hb_000127_050 0.0876541958 - - -
10 Hb_006103_050 0.0984879503 - - -
11 Hb_005551_070 0.1038511684 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
12 Hb_006275_040 0.1073251685 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
13 Hb_001404_060 0.1090693336 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
14 Hb_000046_550 0.1173524842 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
15 Hb_005305_170 0.1181539226 - - PREDICTED: probable beta-1,3-galactosyltransferase 8 [Jatropha curcas]
16 Hb_073870_010 0.1232014868 - - hypothetical protein RCOM_0725510 [Ricinus communis]
17 Hb_001863_520 0.1335944662 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003858_050 0.1399946348 - - hypothetical protein PRUPE_ppa021882mg [Prunus persica]
19 Hb_160814_010 0.14366636 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
20 Hb_023714_010 0.1482526982 - - hypothetical protein B456_007G377100 [Gossypium raimondii]

Gene co-expression network

sample Hb_020112_010 Hb_020112_010 Hb_000496_080 Hb_000496_080 Hb_020112_010--Hb_000496_080 Hb_010308_010 Hb_010308_010 Hb_020112_010--Hb_010308_010 Hb_004330_050 Hb_004330_050 Hb_020112_010--Hb_004330_050 Hb_001300_060 Hb_001300_060 Hb_020112_010--Hb_001300_060 Hb_000329_570 Hb_000329_570 Hb_020112_010--Hb_000329_570 Hb_000743_070 Hb_000743_070 Hb_020112_010--Hb_000743_070 Hb_000496_080--Hb_010308_010 Hb_000496_080--Hb_004330_050 Hb_000496_080--Hb_001300_060 Hb_000496_080--Hb_000329_570 Hb_000496_080--Hb_000743_070 Hb_010308_010--Hb_004330_050 Hb_010308_010--Hb_001300_060 Hb_010308_010--Hb_000329_570 Hb_010308_010--Hb_000743_070 Hb_004330_050--Hb_001300_060 Hb_004330_050--Hb_000329_570 Hb_004330_050--Hb_000743_070 Hb_001300_060--Hb_000329_570 Hb_006275_040 Hb_006275_040 Hb_001300_060--Hb_006275_040 Hb_004785_150 Hb_004785_150 Hb_000329_570--Hb_004785_150 Hb_000127_050 Hb_000127_050 Hb_000743_070--Hb_000127_050 Hb_000743_070--Hb_004785_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0308029 0.128132 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0604199 0

CAGE analysis