Hb_003082_090

Information

Type -
Description -
Location Contig3082: 90242-91462
Sequence    

Annotation

kegg
ID pop:POPTR_0013s099451
description hypothetical protein
nr
ID XP_006376116.1
description hypothetical protein POPTR_0013s099451g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FRT5
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0013s099451g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32539: 90800-91481 , PASA_asmbl_32540: 90800-91481
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003082_090 0.0 - - hypothetical protein POPTR_0013s099451g, partial [Populus trichocarpa]
2 Hb_002217_400 0.0217978894 - - polynucleotidyl transferase, ribonuclease H-like protein [Arabidopsis thaliana]
3 Hb_000028_450 0.0259929551 - - PREDICTED: monoglyceride lipase-like [Jatropha curcas]
4 Hb_005357_040 0.046323584 - - gibberellin 20-oxidase, putative [Ricinus communis]
5 Hb_005389_030 0.0496707317 - - hypothetical protein VITISV_023348 [Vitis vinifera]
6 Hb_004598_020 0.0504456083 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
7 Hb_000617_160 0.0533479514 - - -
8 Hb_138585_070 0.0541158956 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000732_200 0.0587609407 - - conserved hypothetical protein [Ricinus communis]
10 Hb_180864_010 0.0665559633 - - hypothetical protein B456_010G097000 [Gossypium raimondii]
11 Hb_000984_280 0.072561526 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 [Jatropha curcas]
12 Hb_070266_010 0.0763646548 - - LRR.XII-like protein, partial [Platanus x acerifolia]
13 Hb_001242_170 0.0764975303 - - conserved hypothetical protein [Ricinus communis]
14 Hb_100953_010 0.0840201209 - - hypothetical protein JCGZ_10310 [Jatropha curcas]
15 Hb_001369_510 0.0879643831 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
16 Hb_002267_110 0.0880631832 - - -
17 Hb_163989_010 0.089122564 - - conserved hypothetical protein [Ricinus communis]
18 Hb_085600_010 0.0927315068 - - PREDICTED: peroxidase 24-like [Jatropha curcas]
19 Hb_007138_010 0.0952887833 - - PREDICTED: putative laccase-9 [Jatropha curcas]
20 Hb_002641_090 0.0983518017 - - PREDICTED: uncharacterized protein LOC105643559 [Jatropha curcas]

Gene co-expression network

sample Hb_003082_090 Hb_003082_090 Hb_002217_400 Hb_002217_400 Hb_003082_090--Hb_002217_400 Hb_000028_450 Hb_000028_450 Hb_003082_090--Hb_000028_450 Hb_005357_040 Hb_005357_040 Hb_003082_090--Hb_005357_040 Hb_005389_030 Hb_005389_030 Hb_003082_090--Hb_005389_030 Hb_004598_020 Hb_004598_020 Hb_003082_090--Hb_004598_020 Hb_000617_160 Hb_000617_160 Hb_003082_090--Hb_000617_160 Hb_002217_400--Hb_000028_450 Hb_002217_400--Hb_005357_040 Hb_002217_400--Hb_000617_160 Hb_138585_070 Hb_138585_070 Hb_002217_400--Hb_138585_070 Hb_000732_200 Hb_000732_200 Hb_002217_400--Hb_000732_200 Hb_000028_450--Hb_005357_040 Hb_000028_450--Hb_138585_070 Hb_000028_450--Hb_005389_030 Hb_000028_450--Hb_000617_160 Hb_005357_040--Hb_138585_070 Hb_005357_040--Hb_005389_030 Hb_005357_040--Hb_000617_160 Hb_005357_040--Hb_000732_200 Hb_100953_010 Hb_100953_010 Hb_005389_030--Hb_100953_010 Hb_005389_030--Hb_002217_400 Hb_007138_010 Hb_007138_010 Hb_005389_030--Hb_007138_010 Hb_005389_030--Hb_138585_070 Hb_070266_010 Hb_070266_010 Hb_004598_020--Hb_070266_010 Hb_180864_010 Hb_180864_010 Hb_004598_020--Hb_180864_010 Hb_004598_020--Hb_002217_400 Hb_002267_110 Hb_002267_110 Hb_004598_020--Hb_002267_110 Hb_004598_020--Hb_000028_450 Hb_000617_160--Hb_138585_070 Hb_000617_160--Hb_000732_200 Hb_000984_280 Hb_000984_280 Hb_000617_160--Hb_000984_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0849567 0.193997 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0265862 0

CAGE analysis