Hb_005357_040

Information

Type -
Description -
Location Contig5357: 44140-47684
Sequence    

Annotation

kegg
ID rcu:RCOM_0905790
description gibberellin 20-oxidase, putative (EC:1.14.11.15)
nr
ID XP_002518538.1
description gibberellin 20-oxidase, putative [Ricinus communis]
swissprot
ID O49561
description Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX8 PE=1 SV=2
trembl
ID B9RXR9
description Gibberellin 20-oxidase, putative OS=Ricinus communis GN=RCOM_0905790 PE=3 SV=1
Gene Ontology
ID GO:0016707
description gibberellin 2-beta-dioxygenase 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47546: 44515-46916 , PASA_asmbl_47548: 47672-48964
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005357_040 0.0 - - gibberellin 20-oxidase, putative [Ricinus communis]
2 Hb_000028_450 0.0204898851 - - PREDICTED: monoglyceride lipase-like [Jatropha curcas]
3 Hb_138585_070 0.0222073383 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005389_030 0.02581913 - - hypothetical protein VITISV_023348 [Vitis vinifera]
5 Hb_000617_160 0.0276565498 - - -
6 Hb_002217_400 0.028409979 - - polynucleotidyl transferase, ribonuclease H-like protein [Arabidopsis thaliana]
7 Hb_000732_200 0.0427725841 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003082_090 0.046323584 - - hypothetical protein POPTR_0013s099451g, partial [Populus trichocarpa]
9 Hb_007138_010 0.0619065673 - - PREDICTED: putative laccase-9 [Jatropha curcas]
10 Hb_100953_010 0.0628323058 - - hypothetical protein JCGZ_10310 [Jatropha curcas]
11 Hb_000984_280 0.0735071862 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 [Jatropha curcas]
12 Hb_001369_510 0.076295231 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
13 Hb_163989_010 0.0868127976 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001242_170 0.0900458643 - - conserved hypothetical protein [Ricinus communis]
15 Hb_180864_010 0.0921755086 - - hypothetical protein B456_010G097000 [Gossypium raimondii]
16 Hb_006103_050 0.0933036397 - - -
17 Hb_004598_020 0.0964339633 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
18 Hb_001404_060 0.0968625113 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_073870_010 0.102027945 - - hypothetical protein RCOM_0725510 [Ricinus communis]
20 Hb_002641_090 0.102361233 - - PREDICTED: uncharacterized protein LOC105643559 [Jatropha curcas]

Gene co-expression network

sample Hb_005357_040 Hb_005357_040 Hb_000028_450 Hb_000028_450 Hb_005357_040--Hb_000028_450 Hb_138585_070 Hb_138585_070 Hb_005357_040--Hb_138585_070 Hb_005389_030 Hb_005389_030 Hb_005357_040--Hb_005389_030 Hb_000617_160 Hb_000617_160 Hb_005357_040--Hb_000617_160 Hb_002217_400 Hb_002217_400 Hb_005357_040--Hb_002217_400 Hb_000732_200 Hb_000732_200 Hb_005357_040--Hb_000732_200 Hb_000028_450--Hb_002217_400 Hb_003082_090 Hb_003082_090 Hb_000028_450--Hb_003082_090 Hb_000028_450--Hb_138585_070 Hb_000028_450--Hb_005389_030 Hb_000028_450--Hb_000617_160 Hb_138585_070--Hb_000617_160 Hb_138585_070--Hb_000732_200 Hb_138585_070--Hb_002217_400 Hb_138585_070--Hb_005389_030 Hb_100953_010 Hb_100953_010 Hb_005389_030--Hb_100953_010 Hb_005389_030--Hb_002217_400 Hb_007138_010 Hb_007138_010 Hb_005389_030--Hb_007138_010 Hb_000617_160--Hb_000732_200 Hb_000617_160--Hb_002217_400 Hb_000984_280 Hb_000984_280 Hb_000617_160--Hb_000984_280 Hb_002217_400--Hb_003082_090 Hb_002217_400--Hb_000732_200 Hb_000732_200--Hb_000984_280 Hb_000732_200--Hb_000028_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.027236 0.0697659 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0127712 0

CAGE analysis