Hb_001242_170

Information

Type -
Description -
Location Contig1242: 191452-191901
Sequence    

Annotation

kegg
ID rcu:RCOM_0962050
description hypothetical protein
nr
ID XP_002524345.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q0WPR6
description Auxin-responsive protein SAUR65 OS=Arabidopsis thaliana GN=SAUR65 PE=2 SV=1
trembl
ID B9SEC6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0962050 PE=4 SV=1
Gene Ontology
ID GO:0009733
description saur-like auxin-responsive protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001242_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_085600_010 0.0163603822 - - PREDICTED: peroxidase 24-like [Jatropha curcas]
3 Hb_180864_010 0.0236320083 - - hypothetical protein B456_010G097000 [Gossypium raimondii]
4 Hb_000984_280 0.0240779509 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 [Jatropha curcas]
5 Hb_000732_200 0.0541273349 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000504_060 0.0578895221 - - Cell division cycle protein cdt2, putative [Ricinus communis]
7 Hb_000617_160 0.0677555944 - - -
8 Hb_002217_400 0.0701307325 - - polynucleotidyl transferase, ribonuclease H-like protein [Arabidopsis thaliana]
9 Hb_002025_280 0.0709938063 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
10 Hb_002766_070 0.0740501815 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
11 Hb_138585_070 0.0744884996 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003082_090 0.0764975303 - - hypothetical protein POPTR_0013s099451g, partial [Populus trichocarpa]
13 Hb_000028_450 0.0795377424 - - PREDICTED: monoglyceride lipase-like [Jatropha curcas]
14 Hb_000531_010 0.0812441833 transcription factor TF Family: G2-like hypothetical protein POPTR_0018s14830g [Populus trichocarpa]
15 Hb_004598_020 0.0875380746 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
16 Hb_005357_040 0.0900458643 - - gibberellin 20-oxidase, putative [Ricinus communis]
17 Hb_002759_200 0.0980607513 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
18 Hb_059502_010 0.1081157055 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
19 Hb_005389_030 0.1109312166 - - hypothetical protein VITISV_023348 [Vitis vinifera]
20 Hb_033312_100 0.1132039839 - - -

Gene co-expression network

sample Hb_001242_170 Hb_001242_170 Hb_085600_010 Hb_085600_010 Hb_001242_170--Hb_085600_010 Hb_180864_010 Hb_180864_010 Hb_001242_170--Hb_180864_010 Hb_000984_280 Hb_000984_280 Hb_001242_170--Hb_000984_280 Hb_000732_200 Hb_000732_200 Hb_001242_170--Hb_000732_200 Hb_000504_060 Hb_000504_060 Hb_001242_170--Hb_000504_060 Hb_000617_160 Hb_000617_160 Hb_001242_170--Hb_000617_160 Hb_085600_010--Hb_180864_010 Hb_085600_010--Hb_000984_280 Hb_085600_010--Hb_000504_060 Hb_002025_280 Hb_002025_280 Hb_085600_010--Hb_002025_280 Hb_002766_070 Hb_002766_070 Hb_085600_010--Hb_002766_070 Hb_180864_010--Hb_000984_280 Hb_180864_010--Hb_000732_200 Hb_004598_020 Hb_004598_020 Hb_180864_010--Hb_004598_020 Hb_003082_090 Hb_003082_090 Hb_180864_010--Hb_003082_090 Hb_000984_280--Hb_000732_200 Hb_000984_280--Hb_000504_060 Hb_000984_280--Hb_000617_160 Hb_000732_200--Hb_000617_160 Hb_138585_070 Hb_138585_070 Hb_000732_200--Hb_138585_070 Hb_002217_400 Hb_002217_400 Hb_000732_200--Hb_002217_400 Hb_005357_040 Hb_005357_040 Hb_000732_200--Hb_005357_040 Hb_000028_450 Hb_000028_450 Hb_000732_200--Hb_000028_450 Hb_002759_200 Hb_002759_200 Hb_000504_060--Hb_002759_200 Hb_000504_060--Hb_000732_200 Hb_000504_060--Hb_000617_160 Hb_000617_160--Hb_138585_070 Hb_000617_160--Hb_005357_040 Hb_000617_160--Hb_002217_400 Hb_000617_160--Hb_000028_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.166286 0.264242 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0530238 0

CAGE analysis