Hb_002025_280

Information

Type -
Description -
Location Contig2025: 216985-220439
Sequence    

Annotation

kegg
ID rcu:RCOM_0775790
description hypothetical protein
nr
ID XP_012072410.1
description PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L170
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04848 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002025_280 0.0 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
2 Hb_002766_070 0.0152566666 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
3 Hb_033312_100 0.0465593594 - - -
4 Hb_000531_010 0.0471725683 transcription factor TF Family: G2-like hypothetical protein POPTR_0018s14830g [Populus trichocarpa]
5 Hb_085600_010 0.05863216 - - PREDICTED: peroxidase 24-like [Jatropha curcas]
6 Hb_001242_170 0.0709938063 - - conserved hypothetical protein [Ricinus communis]
7 Hb_180864_010 0.0710088136 - - hypothetical protein B456_010G097000 [Gossypium raimondii]
8 Hb_059502_010 0.0894978128 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
9 Hb_000984_280 0.0927495333 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 [Jatropha curcas]
10 Hb_000504_060 0.1013274655 - - Cell division cycle protein cdt2, putative [Ricinus communis]
11 Hb_000422_040 0.1028230658 - - hypothetical protein CICLE_v10013147mg [Citrus clementina]
12 Hb_005306_060 0.1102199368 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
13 Hb_004598_020 0.1238108208 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
14 Hb_000732_200 0.1246728465 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000163_020 0.1273878763 - - -
16 Hb_003010_050 0.1282259808 - - -
17 Hb_007304_020 0.1286357718 - - PREDICTED: uncharacterized protein LOC100256879 [Vitis vinifera]
18 Hb_001247_060 0.1313786651 - - zinc finger protein, putative [Ricinus communis]
19 Hb_000140_200 0.1313790689 - - PREDICTED: uncharacterized protein LOC105642928 [Jatropha curcas]
20 Hb_046204_010 0.1313893823 - - PREDICTED: peroxidase 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_002025_280 Hb_002025_280 Hb_002766_070 Hb_002766_070 Hb_002025_280--Hb_002766_070 Hb_033312_100 Hb_033312_100 Hb_002025_280--Hb_033312_100 Hb_000531_010 Hb_000531_010 Hb_002025_280--Hb_000531_010 Hb_085600_010 Hb_085600_010 Hb_002025_280--Hb_085600_010 Hb_001242_170 Hb_001242_170 Hb_002025_280--Hb_001242_170 Hb_180864_010 Hb_180864_010 Hb_002025_280--Hb_180864_010 Hb_002766_070--Hb_033312_100 Hb_002766_070--Hb_085600_010 Hb_002766_070--Hb_000531_010 Hb_002766_070--Hb_001242_170 Hb_002766_070--Hb_180864_010 Hb_033312_100--Hb_000531_010 Hb_000422_040 Hb_000422_040 Hb_033312_100--Hb_000422_040 Hb_059502_010 Hb_059502_010 Hb_033312_100--Hb_059502_010 Hb_046204_010 Hb_046204_010 Hb_033312_100--Hb_046204_010 Hb_000531_010--Hb_059502_010 Hb_000531_010--Hb_180864_010 Hb_000531_010--Hb_085600_010 Hb_085600_010--Hb_001242_170 Hb_085600_010--Hb_180864_010 Hb_000984_280 Hb_000984_280 Hb_085600_010--Hb_000984_280 Hb_000504_060 Hb_000504_060 Hb_085600_010--Hb_000504_060 Hb_001242_170--Hb_180864_010 Hb_001242_170--Hb_000984_280 Hb_000732_200 Hb_000732_200 Hb_001242_170--Hb_000732_200 Hb_001242_170--Hb_000504_060 Hb_000617_160 Hb_000617_160 Hb_001242_170--Hb_000617_160 Hb_180864_010--Hb_000984_280 Hb_180864_010--Hb_000732_200 Hb_004598_020 Hb_004598_020 Hb_180864_010--Hb_004598_020 Hb_003082_090 Hb_003082_090 Hb_180864_010--Hb_003082_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.323684 0.367182 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0708166 0

CAGE analysis