Hb_000531_010

Information

Type transcription factor
Description TF Family: G2-like
Location Contig531: 13376-17654
Sequence    

Annotation

kegg
ID pop:POPTR_0018s14830g
description hypothetical protein
nr
ID XP_006372269.1
description hypothetical protein POPTR_0018s14830g [Populus trichocarpa]
swissprot
ID Q8GUN5
description Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1
trembl
ID U5FJJ4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s14830g PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein phr1-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47386: 16222-16352
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000531_010 0.0 transcription factor TF Family: G2-like hypothetical protein POPTR_0018s14830g [Populus trichocarpa]
2 Hb_059502_010 0.0426301144 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
3 Hb_002025_280 0.0471725683 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
4 Hb_033312_100 0.0497247924 - - -
5 Hb_002766_070 0.0623708612 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
6 Hb_180864_010 0.0668219385 - - hypothetical protein B456_010G097000 [Gossypium raimondii]
7 Hb_085600_010 0.0776067365 - - PREDICTED: peroxidase 24-like [Jatropha curcas]
8 Hb_001242_170 0.0812441833 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007304_020 0.0924437164 - - PREDICTED: uncharacterized protein LOC100256879 [Vitis vinifera]
10 Hb_004598_020 0.0932815033 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
11 Hb_001247_060 0.1017077022 - - zinc finger protein, putative [Ricinus communis]
12 Hb_000984_280 0.1050443374 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 [Jatropha curcas]
13 Hb_000422_040 0.1073766886 - - hypothetical protein CICLE_v10013147mg [Citrus clementina]
14 Hb_000089_090 0.1176328243 - - hypothetical protein POPTR_0019s12670g [Populus trichocarpa]
15 Hb_000962_060 0.1192502386 - - PREDICTED: uncharacterized protein LOC105646517 [Jatropha curcas]
16 Hb_046204_010 0.1208191334 - - PREDICTED: peroxidase 5-like [Jatropha curcas]
17 Hb_003082_090 0.1224339164 - - hypothetical protein POPTR_0013s099451g, partial [Populus trichocarpa]
18 Hb_000035_230 0.1297578601 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
19 Hb_000504_060 0.1297792164 - - Cell division cycle protein cdt2, putative [Ricinus communis]
20 Hb_002217_400 0.1299221519 - - polynucleotidyl transferase, ribonuclease H-like protein [Arabidopsis thaliana]

Gene co-expression network

sample Hb_000531_010 Hb_000531_010 Hb_059502_010 Hb_059502_010 Hb_000531_010--Hb_059502_010 Hb_002025_280 Hb_002025_280 Hb_000531_010--Hb_002025_280 Hb_033312_100 Hb_033312_100 Hb_000531_010--Hb_033312_100 Hb_002766_070 Hb_002766_070 Hb_000531_010--Hb_002766_070 Hb_180864_010 Hb_180864_010 Hb_000531_010--Hb_180864_010 Hb_085600_010 Hb_085600_010 Hb_000531_010--Hb_085600_010 Hb_007304_020 Hb_007304_020 Hb_059502_010--Hb_007304_020 Hb_004598_020 Hb_004598_020 Hb_059502_010--Hb_004598_020 Hb_059502_010--Hb_033312_100 Hb_059502_010--Hb_180864_010 Hb_001247_060 Hb_001247_060 Hb_059502_010--Hb_001247_060 Hb_002025_280--Hb_002766_070 Hb_002025_280--Hb_033312_100 Hb_002025_280--Hb_085600_010 Hb_001242_170 Hb_001242_170 Hb_002025_280--Hb_001242_170 Hb_002025_280--Hb_180864_010 Hb_033312_100--Hb_002766_070 Hb_000422_040 Hb_000422_040 Hb_033312_100--Hb_000422_040 Hb_046204_010 Hb_046204_010 Hb_033312_100--Hb_046204_010 Hb_002766_070--Hb_085600_010 Hb_002766_070--Hb_001242_170 Hb_002766_070--Hb_180864_010 Hb_180864_010--Hb_001242_170 Hb_180864_010--Hb_085600_010 Hb_000984_280 Hb_000984_280 Hb_180864_010--Hb_000984_280 Hb_000732_200 Hb_000732_200 Hb_180864_010--Hb_000732_200 Hb_180864_010--Hb_004598_020 Hb_003082_090 Hb_003082_090 Hb_180864_010--Hb_003082_090 Hb_085600_010--Hb_001242_170 Hb_085600_010--Hb_000984_280 Hb_000504_060 Hb_000504_060 Hb_085600_010--Hb_000504_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.069464 0.0870538 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0110411 0

CAGE analysis