Hb_000504_060

Information

Type -
Description -
Location Contig504: 63795-67797
Sequence    

Annotation

kegg
ID rcu:RCOM_1064120
description Cell division cycle protein cdt2, putative
nr
ID XP_002521461.1
description Cell division cycle protein cdt2, putative [Ricinus communis]
swissprot
ID Q5ZJW8
description Denticleless protein homolog OS=Gallus gallus GN=DTL PE=2 SV=1
trembl
ID B9S642
description Cell division cycle protein cdt2, putative OS=Ricinus communis GN=RCOM_1064120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000504_060 0.0 - - Cell division cycle protein cdt2, putative [Ricinus communis]
2 Hb_002759_200 0.0406064181 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
3 Hb_000984_280 0.0453595553 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 [Jatropha curcas]
4 Hb_085600_010 0.0537092699 - - PREDICTED: peroxidase 24-like [Jatropha curcas]
5 Hb_001242_170 0.0578895221 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000732_200 0.0637156758 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000617_160 0.0779960609 - - -
8 Hb_180864_010 0.0813390691 - - hypothetical protein B456_010G097000 [Gossypium raimondii]
9 Hb_138585_070 0.0835846934 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002766_070 0.0951632013 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
11 Hb_005305_170 0.0957130572 - - PREDICTED: probable beta-1,3-galactosyltransferase 8 [Jatropha curcas]
12 Hb_002217_400 0.1003147787 - - polynucleotidyl transferase, ribonuclease H-like protein [Arabidopsis thaliana]
13 Hb_002025_280 0.1013274655 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
14 Hb_000046_550 0.1040575816 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
15 Hb_005551_070 0.1042579852 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
16 Hb_005357_040 0.1055249054 - - gibberellin 20-oxidase, putative [Ricinus communis]
17 Hb_000028_450 0.106252441 - - PREDICTED: monoglyceride lipase-like [Jatropha curcas]
18 Hb_003858_050 0.1088730298 - - hypothetical protein PRUPE_ppa021882mg [Prunus persica]
19 Hb_003082_090 0.1160927326 - - hypothetical protein POPTR_0013s099451g, partial [Populus trichocarpa]
20 Hb_185666_010 0.1248656525 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000504_060 Hb_000504_060 Hb_002759_200 Hb_002759_200 Hb_000504_060--Hb_002759_200 Hb_000984_280 Hb_000984_280 Hb_000504_060--Hb_000984_280 Hb_085600_010 Hb_085600_010 Hb_000504_060--Hb_085600_010 Hb_001242_170 Hb_001242_170 Hb_000504_060--Hb_001242_170 Hb_000732_200 Hb_000732_200 Hb_000504_060--Hb_000732_200 Hb_000617_160 Hb_000617_160 Hb_000504_060--Hb_000617_160 Hb_005305_170 Hb_005305_170 Hb_002759_200--Hb_005305_170 Hb_003858_050 Hb_003858_050 Hb_002759_200--Hb_003858_050 Hb_000046_550 Hb_000046_550 Hb_002759_200--Hb_000046_550 Hb_002759_200--Hb_000984_280 Hb_005551_070 Hb_005551_070 Hb_002759_200--Hb_005551_070 Hb_000984_280--Hb_001242_170 Hb_000984_280--Hb_000732_200 Hb_000984_280--Hb_085600_010 Hb_180864_010 Hb_180864_010 Hb_000984_280--Hb_180864_010 Hb_000984_280--Hb_000617_160 Hb_085600_010--Hb_001242_170 Hb_085600_010--Hb_180864_010 Hb_002025_280 Hb_002025_280 Hb_085600_010--Hb_002025_280 Hb_002766_070 Hb_002766_070 Hb_085600_010--Hb_002766_070 Hb_001242_170--Hb_180864_010 Hb_001242_170--Hb_000732_200 Hb_001242_170--Hb_000617_160 Hb_000732_200--Hb_000617_160 Hb_138585_070 Hb_138585_070 Hb_000732_200--Hb_138585_070 Hb_002217_400 Hb_002217_400 Hb_000732_200--Hb_002217_400 Hb_005357_040 Hb_005357_040 Hb_000732_200--Hb_005357_040 Hb_000028_450 Hb_000028_450 Hb_000732_200--Hb_000028_450 Hb_000617_160--Hb_138585_070 Hb_000617_160--Hb_005357_040 Hb_000617_160--Hb_002217_400 Hb_000617_160--Hb_000028_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0295739 0.0457458 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0138797 0

CAGE analysis