Hb_000046_550

Information

Type -
Description -
Location Contig46: 409752-412658
Sequence    

Annotation

kegg
ID pop:POPTR_0008s22660g
description hypothetical protein
nr
ID XP_012069373.1
description PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
swissprot
ID Q6A333
description Protein ALWAYS EARLY 2 OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1
trembl
ID A0A067KV21
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02000 PE=4 SV=1
Gene Ontology
ID GO:0044238
description protein always early 3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_550 0.0 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
2 Hb_005305_170 0.0137021752 - - PREDICTED: probable beta-1,3-galactosyltransferase 8 [Jatropha curcas]
3 Hb_003858_050 0.031950251 - - hypothetical protein PRUPE_ppa021882mg [Prunus persica]
4 Hb_005551_070 0.0461790857 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
5 Hb_000127_050 0.0572831265 - - -
6 Hb_002759_200 0.0701119768 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
7 Hb_000743_070 0.1003380872 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
8 Hb_000504_060 0.1040575816 - - Cell division cycle protein cdt2, putative [Ricinus communis]
9 Hb_004116_090 0.1048180268 - - -
10 Hb_006103_050 0.1049765059 - - -
11 Hb_020112_010 0.1173524842 - - acyltransferase, putative [Ricinus communis]
12 Hb_004330_050 0.1229759689 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000732_200 0.1250057736 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000496_080 0.1256500005 - - Proteinase inhibitor, putative [Ricinus communis]
15 Hb_010308_010 0.1261794037 - - hypothetical protein JCGZ_22818 [Jatropha curcas]
16 Hb_000617_160 0.1280826691 - - -
17 Hb_138585_070 0.1281962257 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001404_060 0.1319603111 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_160814_010 0.1321749055 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
20 Hb_000984_280 0.1339102568 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000046_550 Hb_000046_550 Hb_005305_170 Hb_005305_170 Hb_000046_550--Hb_005305_170 Hb_003858_050 Hb_003858_050 Hb_000046_550--Hb_003858_050 Hb_005551_070 Hb_005551_070 Hb_000046_550--Hb_005551_070 Hb_000127_050 Hb_000127_050 Hb_000046_550--Hb_000127_050 Hb_002759_200 Hb_002759_200 Hb_000046_550--Hb_002759_200 Hb_000743_070 Hb_000743_070 Hb_000046_550--Hb_000743_070 Hb_005305_170--Hb_005551_070 Hb_005305_170--Hb_003858_050 Hb_005305_170--Hb_002759_200 Hb_005305_170--Hb_000127_050 Hb_006103_050 Hb_006103_050 Hb_005305_170--Hb_006103_050 Hb_003858_050--Hb_000127_050 Hb_003858_050--Hb_002759_200 Hb_004116_090 Hb_004116_090 Hb_003858_050--Hb_004116_090 Hb_003858_050--Hb_005551_070 Hb_005551_070--Hb_006103_050 Hb_005551_070--Hb_000127_050 Hb_005551_070--Hb_002759_200 Hb_000127_050--Hb_000743_070 Hb_160814_010 Hb_160814_010 Hb_000127_050--Hb_160814_010 Hb_000504_060 Hb_000504_060 Hb_002759_200--Hb_000504_060 Hb_000984_280 Hb_000984_280 Hb_002759_200--Hb_000984_280 Hb_020112_010 Hb_020112_010 Hb_000743_070--Hb_020112_010 Hb_004785_150 Hb_004785_150 Hb_000743_070--Hb_004785_150 Hb_000496_080 Hb_000496_080 Hb_000743_070--Hb_000496_080 Hb_010308_010 Hb_010308_010 Hb_000743_070--Hb_010308_010 Hb_004330_050 Hb_004330_050 Hb_000743_070--Hb_004330_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0275082 0.0563043 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.026535 0

CAGE analysis