Hb_004116_090

Information

Type -
Description -
Location Contig4116: 112931-114569
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004116_090 0.0 - - -
2 Hb_005356_030 0.0526172106 - - protein binding protein, putative [Ricinus communis]
3 Hb_103452_010 0.0554841781 - - hypothetical protein VITISV_027174 [Vitis vinifera]
4 Hb_001006_050 0.0579831016 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
5 Hb_135673_010 0.0693937684 - - Germin-like protein subfamily 1 member 6 precursor [Populus trichocarpa]
6 Hb_003858_050 0.072954827 - - hypothetical protein PRUPE_ppa021882mg [Prunus persica]
7 Hb_151094_020 0.0824408789 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Prunus mume]
8 Hb_000046_550 0.1048180268 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
9 Hb_002759_200 0.1105095836 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
10 Hb_000127_050 0.1144836338 - - -
11 Hb_005305_170 0.1155531738 - - PREDICTED: probable beta-1,3-galactosyltransferase 8 [Jatropha curcas]
12 Hb_010812_130 0.1169217636 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
13 Hb_147060_010 0.1170128374 - - PREDICTED: probable glutathione S-transferase parC [Populus euphratica]
14 Hb_160814_010 0.1207917436 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
15 Hb_046615_040 0.1256225907 - - unnamed protein product [Vitis vinifera]
16 Hb_000002_150 0.1278479567 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000438_030 0.1292884472 - - -
18 Hb_003010_050 0.1468951284 - - -
19 Hb_000504_060 0.1477425351 - - Cell division cycle protein cdt2, putative [Ricinus communis]
20 Hb_005551_070 0.150043481 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004116_090 Hb_004116_090 Hb_005356_030 Hb_005356_030 Hb_004116_090--Hb_005356_030 Hb_103452_010 Hb_103452_010 Hb_004116_090--Hb_103452_010 Hb_001006_050 Hb_001006_050 Hb_004116_090--Hb_001006_050 Hb_135673_010 Hb_135673_010 Hb_004116_090--Hb_135673_010 Hb_003858_050 Hb_003858_050 Hb_004116_090--Hb_003858_050 Hb_151094_020 Hb_151094_020 Hb_004116_090--Hb_151094_020 Hb_005356_030--Hb_103452_010 Hb_005356_030--Hb_135673_010 Hb_005356_030--Hb_001006_050 Hb_005356_030--Hb_151094_020 Hb_000002_150 Hb_000002_150 Hb_005356_030--Hb_000002_150 Hb_103452_010--Hb_135673_010 Hb_103452_010--Hb_001006_050 Hb_103452_010--Hb_151094_020 Hb_103452_010--Hb_000002_150 Hb_001006_050--Hb_135673_010 Hb_001006_050--Hb_151094_020 Hb_147060_010 Hb_147060_010 Hb_001006_050--Hb_147060_010 Hb_135673_010--Hb_151094_020 Hb_002498_290 Hb_002498_290 Hb_135673_010--Hb_002498_290 Hb_000046_550 Hb_000046_550 Hb_003858_050--Hb_000046_550 Hb_005305_170 Hb_005305_170 Hb_003858_050--Hb_005305_170 Hb_000127_050 Hb_000127_050 Hb_003858_050--Hb_000127_050 Hb_002759_200 Hb_002759_200 Hb_003858_050--Hb_002759_200 Hb_005551_070 Hb_005551_070 Hb_003858_050--Hb_005551_070 Hb_151094_020--Hb_147060_010 Hb_010812_130 Hb_010812_130 Hb_151094_020--Hb_010812_130 Hb_000438_030 Hb_000438_030 Hb_151094_020--Hb_000438_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.027188 0.0330835 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0250074 0

CAGE analysis