Hb_000002_150

Information

Type -
Description -
Location Contig2: 276909-277578
Sequence    

Annotation

kegg
ID rcu:RCOM_0398770
description hypothetical protein
nr
ID XP_002532695.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T376
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0398770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003020_340 0.0547943183 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
3 Hb_160814_010 0.073473928 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
4 Hb_000147_010 0.0846197861 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
5 Hb_005356_030 0.1014752501 - - protein binding protein, putative [Ricinus communis]
6 Hb_000925_120 0.1060583339 - - Spotted leaf protein, putative [Ricinus communis]
7 Hb_103452_010 0.1139778211 - - hypothetical protein VITISV_027174 [Vitis vinifera]
8 Hb_135673_010 0.1192324066 - - Germin-like protein subfamily 1 member 6 precursor [Populus trichocarpa]
9 Hb_004116_090 0.1278479567 - - -
10 Hb_001006_050 0.1319652683 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
11 Hb_000705_110 0.144099538 - - hypothetical protein POPTR_0005s09220g [Populus trichocarpa]
12 Hb_055154_010 0.1469671281 - - PREDICTED: laccase-7 [Jatropha curcas]
13 Hb_000161_230 0.1484782054 - - lactoylglutathione lyase, putative [Ricinus communis]
14 Hb_000127_050 0.1490186416 - - -
15 Hb_000364_130 0.1516211183 - - unnamed protein product [Vitis vinifera]
16 Hb_001633_120 0.1523653065 - - PREDICTED: uncharacterized protein LOC105630199 [Jatropha curcas]
17 Hb_002559_010 0.154760157 - - hypothetical protein JCGZ_06274 [Jatropha curcas]
18 Hb_003858_050 0.1632287756 - - hypothetical protein PRUPE_ppa021882mg [Prunus persica]
19 Hb_000743_070 0.1634698782 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
20 Hb_116783_010 0.1642259444 - - hypothetical protein POPTR_0011s16190g [Populus trichocarpa]

Gene co-expression network

sample Hb_000002_150 Hb_000002_150 Hb_003020_340 Hb_003020_340 Hb_000002_150--Hb_003020_340 Hb_160814_010 Hb_160814_010 Hb_000002_150--Hb_160814_010 Hb_000147_010 Hb_000147_010 Hb_000002_150--Hb_000147_010 Hb_005356_030 Hb_005356_030 Hb_000002_150--Hb_005356_030 Hb_000925_120 Hb_000925_120 Hb_000002_150--Hb_000925_120 Hb_103452_010 Hb_103452_010 Hb_000002_150--Hb_103452_010 Hb_003020_340--Hb_000925_120 Hb_055154_010 Hb_055154_010 Hb_003020_340--Hb_055154_010 Hb_003020_340--Hb_000147_010 Hb_003020_340--Hb_005356_030 Hb_003480_010 Hb_003480_010 Hb_003020_340--Hb_003480_010 Hb_160814_010--Hb_000147_010 Hb_000127_050 Hb_000127_050 Hb_160814_010--Hb_000127_050 Hb_000743_070 Hb_000743_070 Hb_160814_010--Hb_000743_070 Hb_000705_110 Hb_000705_110 Hb_160814_010--Hb_000705_110 Hb_004785_150 Hb_004785_150 Hb_160814_010--Hb_004785_150 Hb_000147_010--Hb_000925_120 Hb_116783_010 Hb_116783_010 Hb_000147_010--Hb_116783_010 Hb_000147_010--Hb_000705_110 Hb_005356_030--Hb_103452_010 Hb_135673_010 Hb_135673_010 Hb_005356_030--Hb_135673_010 Hb_001006_050 Hb_001006_050 Hb_005356_030--Hb_001006_050 Hb_004116_090 Hb_004116_090 Hb_005356_030--Hb_004116_090 Hb_151094_020 Hb_151094_020 Hb_005356_030--Hb_151094_020 Hb_000925_120--Hb_116783_010 Hb_000925_120--Hb_055154_010 Hb_002809_020 Hb_002809_020 Hb_000925_120--Hb_002809_020 Hb_103452_010--Hb_135673_010 Hb_103452_010--Hb_001006_050 Hb_103452_010--Hb_004116_090 Hb_103452_010--Hb_151094_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0494544 0.0703565 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0921383 0

CAGE analysis