Hb_003480_010

Information

Type -
Description -
Location Contig3480: 21424-23055
Sequence    

Annotation

kegg
ID pop:POPTR_0022s00500g
description cytochrome P450 family protein
nr
ID XP_006389514.1
description cytochrome P450 family protein [Populus trichocarpa]
swissprot
ID Q6WNQ8
description Cytochrome P450 81E8 OS=Medicago truncatula GN=CYP81E8 PE=2 SV=1
trembl
ID U7E2H5
description Cytochrome P450 family protein OS=Populus trichocarpa GN=POPTR_0022s00500g PE=3 SV=1
Gene Ontology
ID GO:0004497
description cytochrome p450 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003480_010 0.0 - - cytochrome P450 family protein [Populus trichocarpa]
2 Hb_027242_010 0.0936340762 - - PREDICTED: pathogenesis-related protein 1-like [Populus euphratica]
3 Hb_069151_010 0.113652526 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Gossypium raimondii]
4 Hb_055154_010 0.1170561896 - - PREDICTED: laccase-7 [Jatropha curcas]
5 Hb_178252_010 0.1214239018 - - hypothetical protein POPTR_0018s01890g [Populus trichocarpa]
6 Hb_003020_340 0.1266478628 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
7 Hb_000057_210 0.1282071216 - - hypothetical protein JCGZ_06274 [Jatropha curcas]
8 Hb_001102_060 0.1411638506 - - PREDICTED: receptor-like serine/threonine-protein kinase At1g78530 isoform X1 [Jatropha curcas]
9 Hb_187211_010 0.1523064496 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
10 Hb_140049_060 0.1645264335 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
11 Hb_090510_010 0.1713000808 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
12 Hb_000800_060 0.1736673642 - - hypothetical protein POPTR_0008s02870g [Populus trichocarpa]
13 Hb_032621_010 0.1756644259 - - hypothetical protein PHAVU_006G197300g [Phaseolus vulgaris]
14 Hb_000925_120 0.1770203077 - - Spotted leaf protein, putative [Ricinus communis]
15 Hb_001377_480 0.1779595603 transcription factor TF Family: MYB Myb domain protein 7, putative [Theobroma cacao]
16 Hb_000002_150 0.1799476696 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000668_070 0.1802795405 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003166_020 0.1804992047 - - PREDICTED: RNA-binding E3 ubiquitin-protein ligase MEX3C-like [Jatropha curcas]
19 Hb_003119_120 0.1827021424 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Nicotiana sylvestris]
20 Hb_001158_110 0.1832215895 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]

Gene co-expression network

sample Hb_003480_010 Hb_003480_010 Hb_027242_010 Hb_027242_010 Hb_003480_010--Hb_027242_010 Hb_069151_010 Hb_069151_010 Hb_003480_010--Hb_069151_010 Hb_055154_010 Hb_055154_010 Hb_003480_010--Hb_055154_010 Hb_178252_010 Hb_178252_010 Hb_003480_010--Hb_178252_010 Hb_003020_340 Hb_003020_340 Hb_003480_010--Hb_003020_340 Hb_000057_210 Hb_000057_210 Hb_003480_010--Hb_000057_210 Hb_001102_060 Hb_001102_060 Hb_027242_010--Hb_001102_060 Hb_027242_010--Hb_178252_010 Hb_000101_370 Hb_000101_370 Hb_027242_010--Hb_000101_370 Hb_027242_010--Hb_000057_210 Hb_027242_010--Hb_069151_010 Hb_000668_070 Hb_000668_070 Hb_069151_010--Hb_000668_070 Hb_000800_060 Hb_000800_060 Hb_069151_010--Hb_000800_060 Hb_090510_010 Hb_090510_010 Hb_069151_010--Hb_090510_010 Hb_069151_010--Hb_055154_010 Hb_140049_060 Hb_140049_060 Hb_069151_010--Hb_140049_060 Hb_003166_020 Hb_003166_020 Hb_069151_010--Hb_003166_020 Hb_000925_120 Hb_000925_120 Hb_055154_010--Hb_000925_120 Hb_055154_010--Hb_090510_010 Hb_055154_010--Hb_000800_060 Hb_055154_010--Hb_003020_340 Hb_116783_010 Hb_116783_010 Hb_055154_010--Hb_116783_010 Hb_178252_010--Hb_001102_060 Hb_002809_020 Hb_002809_020 Hb_178252_010--Hb_002809_020 Hb_007017_120 Hb_007017_120 Hb_178252_010--Hb_007017_120 Hb_178252_010--Hb_055154_010 Hb_000002_150 Hb_000002_150 Hb_003020_340--Hb_000002_150 Hb_003020_340--Hb_000925_120 Hb_000147_010 Hb_000147_010 Hb_003020_340--Hb_000147_010 Hb_005356_030 Hb_005356_030 Hb_003020_340--Hb_005356_030 Hb_003119_120 Hb_003119_120 Hb_000057_210--Hb_003119_120 Hb_000057_210--Hb_140049_060 Hb_187211_010 Hb_187211_010 Hb_000057_210--Hb_187211_010 Hb_027028_010 Hb_027028_010 Hb_000057_210--Hb_027028_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0215748 0.0109309 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.039319 0

CAGE analysis