Hb_003166_020

Information

Type -
Description -
Location Contig3166: 31730-33627
Sequence    

Annotation

kegg
ID tcc:TCM_000728
description RING finger protein B, putative
nr
ID XP_012079336.1
description PREDICTED: RNA-binding E3 ubiquitin-protein ligase MEX3C-like [Jatropha curcas]
swissprot
ID Q24307
description Apoptosis 2 inhibitor OS=Drosophila melanogaster GN=Iap2 PE=2 SV=3
trembl
ID A0A0D2QME9
description Gossypium raimondii chromosome 3, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_003G027700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33328: 31934-32807 , PASA_asmbl_33329: 33456-33562
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003166_020 0.0 - - PREDICTED: RNA-binding E3 ubiquitin-protein ligase MEX3C-like [Jatropha curcas]
2 Hb_032621_010 0.0716296966 - - hypothetical protein PHAVU_006G197300g [Phaseolus vulgaris]
3 Hb_000917_330 0.0864665151 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
4 Hb_026650_010 0.0930507453 - - nitrate transporter, putative [Ricinus communis]
5 Hb_000800_060 0.103803493 - - hypothetical protein POPTR_0008s02870g [Populus trichocarpa]
6 Hb_000668_070 0.1068185112 - - conserved hypothetical protein [Ricinus communis]
7 Hb_069151_010 0.1071257891 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Gossypium raimondii]
8 Hb_090510_010 0.1085571311 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
9 Hb_000625_130 0.1143537666 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
10 Hb_005396_010 0.1152995202 - - PREDICTED: interleukin enhancer-binding factor 3-B-like [Jatropha curcas]
11 Hb_002809_020 0.1207493047 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
12 Hb_124625_010 0.1210343591 - - hypothetical protein JCGZ_01142 [Jatropha curcas]
13 Hb_178252_010 0.1241027017 - - hypothetical protein POPTR_0018s01890g [Populus trichocarpa]
14 Hb_007017_120 0.1260480638 - - PREDICTED: exocyst complex component EXO84A [Jatropha curcas]
15 Hb_001936_030 0.1277852036 - - PREDICTED: polygalacturonase At1g48100 isoform X1 [Jatropha curcas]
16 Hb_050898_020 0.1343826826 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
17 Hb_002218_040 0.1386453308 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000075_030 0.139734395 - - PREDICTED: aldo-keto reductase family 4 member C10-like [Fragaria vesca subsp. vesca]
19 Hb_055154_010 0.1435174556 - - PREDICTED: laccase-7 [Jatropha curcas]
20 Hb_003392_030 0.1435629728 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003166_020 Hb_003166_020 Hb_032621_010 Hb_032621_010 Hb_003166_020--Hb_032621_010 Hb_000917_330 Hb_000917_330 Hb_003166_020--Hb_000917_330 Hb_026650_010 Hb_026650_010 Hb_003166_020--Hb_026650_010 Hb_000800_060 Hb_000800_060 Hb_003166_020--Hb_000800_060 Hb_000668_070 Hb_000668_070 Hb_003166_020--Hb_000668_070 Hb_069151_010 Hb_069151_010 Hb_003166_020--Hb_069151_010 Hb_032621_010--Hb_026650_010 Hb_032621_010--Hb_069151_010 Hb_032621_010--Hb_000800_060 Hb_003392_030 Hb_003392_030 Hb_032621_010--Hb_003392_030 Hb_090510_010 Hb_090510_010 Hb_032621_010--Hb_090510_010 Hb_000625_130 Hb_000625_130 Hb_000917_330--Hb_000625_130 Hb_001936_030 Hb_001936_030 Hb_000917_330--Hb_001936_030 Hb_001691_060 Hb_001691_060 Hb_000917_330--Hb_001691_060 Hb_000075_030 Hb_000075_030 Hb_000917_330--Hb_000075_030 Hb_025469_040 Hb_025469_040 Hb_000917_330--Hb_025469_040 Hb_026650_010--Hb_003392_030 Hb_026650_010--Hb_000800_060 Hb_026650_010--Hb_000668_070 Hb_026650_010--Hb_000917_330 Hb_000800_060--Hb_090510_010 Hb_005396_010 Hb_005396_010 Hb_000800_060--Hb_005396_010 Hb_124625_010 Hb_124625_010 Hb_000800_060--Hb_124625_010 Hb_000800_060--Hb_000668_070 Hb_000800_060--Hb_069151_010 Hb_050898_020 Hb_050898_020 Hb_000800_060--Hb_050898_020 Hb_000668_070--Hb_069151_010 Hb_000668_070--Hb_050898_020 Hb_000668_070--Hb_124625_010 Hb_000668_070--Hb_005396_010 Hb_000668_070--Hb_090510_010 Hb_069151_010--Hb_090510_010 Hb_055154_010 Hb_055154_010 Hb_069151_010--Hb_055154_010 Hb_140049_060 Hb_140049_060 Hb_069151_010--Hb_140049_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0451175 3.28177 2.55346 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 14.3252 0.336302

CAGE analysis