Hb_055154_010

Information

Type -
Description -
Location Contig55154: 4351-5334
Sequence    

Annotation

kegg
ID rcu:RCOM_0086740
description laccase, putative (EC:1.10.3.3)
nr
ID XP_012087960.1
description PREDICTED: laccase-7 [Jatropha curcas]
swissprot
ID Q9LFD1
description Laccase-9 OS=Arabidopsis thaliana GN=LAC9 PE=2 SV=1
trembl
ID A0A067JKU4
description Laccase OS=Jatropha curcas GN=JCGZ_25081 PE=3 SV=1
Gene Ontology
ID GO:0048046
description laccase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_055154_010 0.0 - - PREDICTED: laccase-7 [Jatropha curcas]
2 Hb_000925_120 0.0782370582 - - Spotted leaf protein, putative [Ricinus communis]
3 Hb_090510_010 0.0873171255 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
4 Hb_000800_060 0.0990176394 - - hypothetical protein POPTR_0008s02870g [Populus trichocarpa]
5 Hb_069151_010 0.1050043484 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Gossypium raimondii]
6 Hb_003020_340 0.1050683204 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
7 Hb_116783_010 0.1082189761 - - hypothetical protein POPTR_0011s16190g [Populus trichocarpa]
8 Hb_178252_010 0.1151120466 - - hypothetical protein POPTR_0018s01890g [Populus trichocarpa]
9 Hb_003480_010 0.1170561896 - - cytochrome P450 family protein [Populus trichocarpa]
10 Hb_002809_020 0.1183272499 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
11 Hb_005396_010 0.1253787565 - - PREDICTED: interleukin enhancer-binding factor 3-B-like [Jatropha curcas]
12 Hb_003166_020 0.1435174556 - - PREDICTED: RNA-binding E3 ubiquitin-protein ligase MEX3C-like [Jatropha curcas]
13 Hb_032621_010 0.1449500001 - - hypothetical protein PHAVU_006G197300g [Phaseolus vulgaris]
14 Hb_000002_150 0.1469671281 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000147_010 0.1485260857 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
16 Hb_000668_070 0.1511280275 - - conserved hypothetical protein [Ricinus communis]
17 Hb_124625_010 0.1511373004 - - hypothetical protein JCGZ_01142 [Jatropha curcas]
18 Hb_027242_010 0.1612021276 - - PREDICTED: pathogenesis-related protein 1-like [Populus euphratica]
19 Hb_001102_060 0.1635120732 - - PREDICTED: receptor-like serine/threonine-protein kinase At1g78530 isoform X1 [Jatropha curcas]
20 Hb_026650_010 0.1690707901 - - nitrate transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_055154_010 Hb_055154_010 Hb_000925_120 Hb_000925_120 Hb_055154_010--Hb_000925_120 Hb_090510_010 Hb_090510_010 Hb_055154_010--Hb_090510_010 Hb_000800_060 Hb_000800_060 Hb_055154_010--Hb_000800_060 Hb_069151_010 Hb_069151_010 Hb_055154_010--Hb_069151_010 Hb_003020_340 Hb_003020_340 Hb_055154_010--Hb_003020_340 Hb_116783_010 Hb_116783_010 Hb_055154_010--Hb_116783_010 Hb_000925_120--Hb_116783_010 Hb_000147_010 Hb_000147_010 Hb_000925_120--Hb_000147_010 Hb_000925_120--Hb_003020_340 Hb_000002_150 Hb_000002_150 Hb_000925_120--Hb_000002_150 Hb_002809_020 Hb_002809_020 Hb_000925_120--Hb_002809_020 Hb_090510_010--Hb_000800_060 Hb_005396_010 Hb_005396_010 Hb_090510_010--Hb_005396_010 Hb_124625_010 Hb_124625_010 Hb_090510_010--Hb_124625_010 Hb_090510_010--Hb_069151_010 Hb_000668_070 Hb_000668_070 Hb_090510_010--Hb_000668_070 Hb_000800_060--Hb_005396_010 Hb_000800_060--Hb_124625_010 Hb_000800_060--Hb_000668_070 Hb_000800_060--Hb_069151_010 Hb_050898_020 Hb_050898_020 Hb_000800_060--Hb_050898_020 Hb_069151_010--Hb_000668_070 Hb_140049_060 Hb_140049_060 Hb_069151_010--Hb_140049_060 Hb_003166_020 Hb_003166_020 Hb_069151_010--Hb_003166_020 Hb_003020_340--Hb_000002_150 Hb_003020_340--Hb_000147_010 Hb_005356_030 Hb_005356_030 Hb_003020_340--Hb_005356_030 Hb_003480_010 Hb_003480_010 Hb_003020_340--Hb_003480_010 Hb_116783_010--Hb_000147_010 Hb_116783_010--Hb_090510_010 Hb_116783_010--Hb_002809_020 Hb_001242_020 Hb_001242_020 Hb_116783_010--Hb_001242_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0397371 0.0443775 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.12739 0

CAGE analysis