Hb_000668_070

Information

Type -
Description -
Location Contig668: 50761-52931
Sequence    

Annotation

kegg
ID rcu:RCOM_1034120
description hypothetical protein
nr
ID XP_002513884.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5B5X8
description Probable glucan 1,3-beta-glucosidase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=exgA PE=3 SV=2
trembl
ID B9RJG5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1034120 PE=3 SV=1
Gene Ontology
ID GO:0004553
description probable glucan -beta-glucosidase a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000668_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_069151_010 0.0674970342 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Gossypium raimondii]
3 Hb_000800_060 0.0730255161 - - hypothetical protein POPTR_0008s02870g [Populus trichocarpa]
4 Hb_050898_020 0.0734840419 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
5 Hb_124625_010 0.076570398 - - hypothetical protein JCGZ_01142 [Jatropha curcas]
6 Hb_005396_010 0.082891451 - - PREDICTED: interleukin enhancer-binding factor 3-B-like [Jatropha curcas]
7 Hb_090510_010 0.0880832183 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
8 Hb_003166_020 0.1068185112 - - PREDICTED: RNA-binding E3 ubiquitin-protein ligase MEX3C-like [Jatropha curcas]
9 Hb_140049_060 0.1097121782 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
10 Hb_000772_070 0.1204281855 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
11 Hb_032621_010 0.1234081157 - - hypothetical protein PHAVU_006G197300g [Phaseolus vulgaris]
12 Hb_026650_010 0.1324905053 - - nitrate transporter, putative [Ricinus communis]
13 Hb_000917_330 0.1383295733 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
14 Hb_000625_130 0.1469674567 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase [Jatropha curcas]
15 Hb_055154_010 0.1511280275 - - PREDICTED: laccase-7 [Jatropha curcas]
16 Hb_000500_160 0.1532010359 - - hypothetical protein CISIN_1g039640mg, partial [Citrus sinensis]
17 Hb_001936_030 0.1551844807 - - PREDICTED: polygalacturonase At1g48100 isoform X1 [Jatropha curcas]
18 Hb_002966_030 0.1597504574 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002747_010 0.1665167733 - - PREDICTED: alcohol dehydrogenase-like 1 [Jatropha curcas]
20 Hb_003392_030 0.1669567031 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000668_070 Hb_000668_070 Hb_069151_010 Hb_069151_010 Hb_000668_070--Hb_069151_010 Hb_000800_060 Hb_000800_060 Hb_000668_070--Hb_000800_060 Hb_050898_020 Hb_050898_020 Hb_000668_070--Hb_050898_020 Hb_124625_010 Hb_124625_010 Hb_000668_070--Hb_124625_010 Hb_005396_010 Hb_005396_010 Hb_000668_070--Hb_005396_010 Hb_090510_010 Hb_090510_010 Hb_000668_070--Hb_090510_010 Hb_069151_010--Hb_000800_060 Hb_069151_010--Hb_090510_010 Hb_055154_010 Hb_055154_010 Hb_069151_010--Hb_055154_010 Hb_140049_060 Hb_140049_060 Hb_069151_010--Hb_140049_060 Hb_003166_020 Hb_003166_020 Hb_069151_010--Hb_003166_020 Hb_000800_060--Hb_090510_010 Hb_000800_060--Hb_005396_010 Hb_000800_060--Hb_124625_010 Hb_000800_060--Hb_050898_020 Hb_050898_020--Hb_124625_010 Hb_050898_020--Hb_005396_010 Hb_000772_070 Hb_000772_070 Hb_050898_020--Hb_000772_070 Hb_002966_030 Hb_002966_030 Hb_050898_020--Hb_002966_030 Hb_124625_010--Hb_005396_010 Hb_124625_010--Hb_090510_010 Hb_124625_010--Hb_002966_030 Hb_005396_010--Hb_090510_010 Hb_002747_010 Hb_002747_010 Hb_005396_010--Hb_002747_010 Hb_090510_010--Hb_055154_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.144281 0.0864004 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.684724 0

CAGE analysis