Hb_002747_010

Information

Type -
Description -
Location Contig2747: 26341-28570
Sequence    

Annotation

kegg
ID pop:POPTR_0018s13950g
description POPTRDRAFT_826055; alpha-hydroxynitrile lyase family protein
nr
ID XP_012070247.1
description PREDICTED: alcohol dehydrogenase-like 1 [Jatropha curcas]
swissprot
ID A1L4Y2
description Alcohol dehydrogenase-like 3 OS=Arabidopsis thaliana GN=At1g32780 PE=2 SV=1
trembl
ID A0A067KX17
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02563 PE=3 SV=1
Gene Ontology
ID GO:0008270
description alpha-hydroxynitrile lyase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28751: 27327-27835
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002747_010 0.0 - - PREDICTED: alcohol dehydrogenase-like 1 [Jatropha curcas]
2 Hb_002966_030 0.0254232797 - - conserved hypothetical protein [Ricinus communis]
3 Hb_153457_010 0.0266833588 - - Miraculin precursor, putative [Ricinus communis]
4 Hb_012779_010 0.0470739264 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
5 Hb_175167_020 0.0704461176 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000513_100 0.0837628455 - - germin-like protein GLP, partial [Manihot esculenta]
7 Hb_007320_040 0.0912832383 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
8 Hb_124625_010 0.0927509624 - - hypothetical protein JCGZ_01142 [Jatropha curcas]
9 Hb_028008_010 0.092859036 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
10 Hb_005396_010 0.1014284872 - - PREDICTED: interleukin enhancer-binding factor 3-B-like [Jatropha curcas]
11 Hb_177880_010 0.1033283748 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
12 Hb_050898_020 0.1060915668 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
13 Hb_126535_010 0.1074006147 - - hypothetical protein JCGZ_09554 [Jatropha curcas]
14 Hb_004834_020 0.1087915558 - - major allergen Pru ar 1-like [Jatropha curcas]
15 Hb_007897_040 0.1167461939 - - ATP binding protein, putative [Ricinus communis]
16 Hb_001053_010 0.1202810634 - - PREDICTED: polygalacturonase-like [Jatropha curcas]
17 Hb_000297_180 0.1255183342 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
18 Hb_000800_060 0.1323786921 - - hypothetical protein POPTR_0008s02870g [Populus trichocarpa]
19 Hb_090510_010 0.1340024047 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
20 Hb_035583_010 0.1341258053 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]

Gene co-expression network

sample Hb_002747_010 Hb_002747_010 Hb_002966_030 Hb_002966_030 Hb_002747_010--Hb_002966_030 Hb_153457_010 Hb_153457_010 Hb_002747_010--Hb_153457_010 Hb_012779_010 Hb_012779_010 Hb_002747_010--Hb_012779_010 Hb_175167_020 Hb_175167_020 Hb_002747_010--Hb_175167_020 Hb_000513_100 Hb_000513_100 Hb_002747_010--Hb_000513_100 Hb_007320_040 Hb_007320_040 Hb_002747_010--Hb_007320_040 Hb_002966_030--Hb_153457_010 Hb_002966_030--Hb_007320_040 Hb_002966_030--Hb_175167_020 Hb_002966_030--Hb_012779_010 Hb_177880_010 Hb_177880_010 Hb_002966_030--Hb_177880_010 Hb_153457_010--Hb_012779_010 Hb_153457_010--Hb_175167_020 Hb_153457_010--Hb_000513_100 Hb_028008_010 Hb_028008_010 Hb_153457_010--Hb_028008_010 Hb_012779_010--Hb_000513_100 Hb_012779_010--Hb_175167_020 Hb_012779_010--Hb_028008_010 Hb_126535_010 Hb_126535_010 Hb_175167_020--Hb_126535_010 Hb_175167_020--Hb_000513_100 Hb_175167_020--Hb_028008_010 Hb_000513_100--Hb_028008_010 Hb_001189_030 Hb_001189_030 Hb_000513_100--Hb_001189_030 Hb_007320_040--Hb_177880_010 Hb_004834_020 Hb_004834_020 Hb_007320_040--Hb_004834_020 Hb_007320_040--Hb_126535_010 Hb_124247_030 Hb_124247_030 Hb_007320_040--Hb_124247_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0725597 0.231182 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.17814 0

CAGE analysis