Hb_002966_030

Information

Type -
Description -
Location Contig2966: 51028-51629
Sequence    

Annotation

kegg
ID rcu:RCOM_0175580
description hypothetical protein
nr
ID XP_002527513.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SNE4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0175580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002966_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002747_010 0.0254232797 - - PREDICTED: alcohol dehydrogenase-like 1 [Jatropha curcas]
3 Hb_153457_010 0.042160042 - - Miraculin precursor, putative [Ricinus communis]
4 Hb_007320_040 0.0666744772 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
5 Hb_175167_020 0.0700274654 - - conserved hypothetical protein [Ricinus communis]
6 Hb_012779_010 0.0709165223 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
7 Hb_177880_010 0.081639464 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
8 Hb_124625_010 0.0904292418 - - hypothetical protein JCGZ_01142 [Jatropha curcas]
9 Hb_004834_020 0.0908280181 - - major allergen Pru ar 1-like [Jatropha curcas]
10 Hb_028008_010 0.0919308881 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
11 Hb_050898_020 0.0931979464 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
12 Hb_126535_010 0.0939931645 - - hypothetical protein JCGZ_09554 [Jatropha curcas]
13 Hb_000513_100 0.0969072853 - - germin-like protein GLP, partial [Manihot esculenta]
14 Hb_007897_040 0.1033240243 - - ATP binding protein, putative [Ricinus communis]
15 Hb_005396_010 0.1055539831 - - PREDICTED: interleukin enhancer-binding factor 3-B-like [Jatropha curcas]
16 Hb_001053_010 0.1088465555 - - PREDICTED: polygalacturonase-like [Jatropha curcas]
17 Hb_124247_030 0.1228748163 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Jatropha curcas]
18 Hb_035583_010 0.1257177437 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
19 Hb_000772_070 0.1278701232 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
20 Hb_002521_010 0.1342303086 - - cinnamate 4-hydroxylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002966_030 Hb_002966_030 Hb_002747_010 Hb_002747_010 Hb_002966_030--Hb_002747_010 Hb_153457_010 Hb_153457_010 Hb_002966_030--Hb_153457_010 Hb_007320_040 Hb_007320_040 Hb_002966_030--Hb_007320_040 Hb_175167_020 Hb_175167_020 Hb_002966_030--Hb_175167_020 Hb_012779_010 Hb_012779_010 Hb_002966_030--Hb_012779_010 Hb_177880_010 Hb_177880_010 Hb_002966_030--Hb_177880_010 Hb_002747_010--Hb_153457_010 Hb_002747_010--Hb_012779_010 Hb_002747_010--Hb_175167_020 Hb_000513_100 Hb_000513_100 Hb_002747_010--Hb_000513_100 Hb_002747_010--Hb_007320_040 Hb_153457_010--Hb_012779_010 Hb_153457_010--Hb_175167_020 Hb_153457_010--Hb_000513_100 Hb_028008_010 Hb_028008_010 Hb_153457_010--Hb_028008_010 Hb_007320_040--Hb_177880_010 Hb_004834_020 Hb_004834_020 Hb_007320_040--Hb_004834_020 Hb_126535_010 Hb_126535_010 Hb_007320_040--Hb_126535_010 Hb_124247_030 Hb_124247_030 Hb_007320_040--Hb_124247_030 Hb_175167_020--Hb_126535_010 Hb_175167_020--Hb_000513_100 Hb_175167_020--Hb_028008_010 Hb_012779_010--Hb_000513_100 Hb_012779_010--Hb_175167_020 Hb_012779_010--Hb_028008_010 Hb_177880_010--Hb_004834_020 Hb_177880_010--Hb_126535_010 Hb_177880_010--Hb_124247_030 Hb_177880_010--Hb_175167_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.72792 2.01889 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 12.2033 0

CAGE analysis