Hb_028008_010

Information

Type -
Description -
Location Contig28008: 3054-4459
Sequence    

Annotation

kegg
ID pxb:103937794
description XET2; probable xyloglucan endotransglucosylase/hydrolase protein 23
nr
ID XP_012066223.1
description PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
swissprot
ID Q38910
description Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1
trembl
ID S5MMS2
description Xyloglucan endotransglucosylase/hydrolase OS=Pyrus x bretschneideri GN=XET2 PE=2 SV=1
Gene Ontology
ID GO:0005618
description probable xyloglucan endotransglucosylase hydrolase protein 23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028008_010 0.0 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
2 Hb_000513_100 0.059757564 - - germin-like protein GLP, partial [Manihot esculenta]
3 Hb_175167_020 0.0737572729 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002521_010 0.0745963452 - - cinnamate 4-hydroxylase, putative [Ricinus communis]
5 Hb_153457_010 0.0823804838 - - Miraculin precursor, putative [Ricinus communis]
6 Hb_000021_090 0.0896947433 - - -
7 Hb_002966_030 0.0919308881 - - conserved hypothetical protein [Ricinus communis]
8 Hb_126535_010 0.0928275227 - - hypothetical protein JCGZ_09554 [Jatropha curcas]
9 Hb_002747_010 0.092859036 - - PREDICTED: alcohol dehydrogenase-like 1 [Jatropha curcas]
10 Hb_006153_190 0.0991013179 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
11 Hb_012779_010 0.100151527 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
12 Hb_177880_010 0.1052806078 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
13 Hb_124247_030 0.1074864704 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Jatropha curcas]
14 Hb_004834_020 0.107595116 - - major allergen Pru ar 1-like [Jatropha curcas]
15 Hb_007320_040 0.1100325009 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
16 Hb_001189_030 0.118082793 - - hypothetical protein RCOM_1341480 [Ricinus communis]
17 Hb_000005_270 0.1181532041 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
18 Hb_009545_040 0.1258726096 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000347_530 0.1294727752 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]
20 Hb_000120_440 0.1304755744 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_028008_010 Hb_028008_010 Hb_000513_100 Hb_000513_100 Hb_028008_010--Hb_000513_100 Hb_175167_020 Hb_175167_020 Hb_028008_010--Hb_175167_020 Hb_002521_010 Hb_002521_010 Hb_028008_010--Hb_002521_010 Hb_153457_010 Hb_153457_010 Hb_028008_010--Hb_153457_010 Hb_000021_090 Hb_000021_090 Hb_028008_010--Hb_000021_090 Hb_002966_030 Hb_002966_030 Hb_028008_010--Hb_002966_030 Hb_012779_010 Hb_012779_010 Hb_000513_100--Hb_012779_010 Hb_000513_100--Hb_153457_010 Hb_000513_100--Hb_175167_020 Hb_001189_030 Hb_001189_030 Hb_000513_100--Hb_001189_030 Hb_002747_010 Hb_002747_010 Hb_000513_100--Hb_002747_010 Hb_175167_020--Hb_153457_010 Hb_126535_010 Hb_126535_010 Hb_175167_020--Hb_126535_010 Hb_175167_020--Hb_002966_030 Hb_175167_020--Hb_002747_010 Hb_000200_180 Hb_000200_180 Hb_002521_010--Hb_000200_180 Hb_006153_190 Hb_006153_190 Hb_002521_010--Hb_006153_190 Hb_002521_010--Hb_000021_090 Hb_144783_010 Hb_144783_010 Hb_002521_010--Hb_144783_010 Hb_002521_010--Hb_000513_100 Hb_153457_010--Hb_002747_010 Hb_153457_010--Hb_012779_010 Hb_153457_010--Hb_002966_030 Hb_000120_440 Hb_000120_440 Hb_000021_090--Hb_000120_440 Hb_009545_040 Hb_009545_040 Hb_000021_090--Hb_009545_040 Hb_025490_030 Hb_025490_030 Hb_000021_090--Hb_025490_030 Hb_004037_010 Hb_004037_010 Hb_000021_090--Hb_004037_010 Hb_124247_030 Hb_124247_030 Hb_000021_090--Hb_124247_030 Hb_000021_090--Hb_006153_190 Hb_002966_030--Hb_002747_010 Hb_007320_040 Hb_007320_040 Hb_002966_030--Hb_007320_040 Hb_002966_030--Hb_012779_010 Hb_177880_010 Hb_177880_010 Hb_002966_030--Hb_177880_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.038825 0.0892252 0.54029 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.03932 0

CAGE analysis