Hb_004037_010

Information

Type -
Description -
Location Contig4037: 4759-5565
Sequence    

Annotation

kegg
ID rcu:RCOM_0703590
description hypothetical protein
nr
ID XP_012070129.1
description PREDICTED: uncharacterized protein LOC105632369 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KV07
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03518 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40082: 4756-5498
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004037_010 0.0 - - PREDICTED: uncharacterized protein LOC105632369 [Jatropha curcas]
2 Hb_009545_040 0.0658672556 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000120_440 0.0674954899 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000021_090 0.0677789949 - - -
5 Hb_025490_030 0.07311814 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
6 Hb_001165_040 0.0792348368 - - hypothetical protein POPTR_0009s10120g [Populus trichocarpa]
7 Hb_000076_200 0.0813381185 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007532_050 0.0816744686 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
9 Hb_124247_030 0.0871121023 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Jatropha curcas]
10 Hb_000318_440 0.088904575 - - PREDICTED: allene oxide synthase 2-like [Jatropha curcas]
11 Hb_004693_010 0.0987083915 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
12 Hb_005356_010 0.1000229297 - - hypothetical protein POPTR_0003s16550g [Populus trichocarpa]
13 Hb_002805_230 0.1031543686 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
14 Hb_007527_020 0.1035073283 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
15 Hb_006153_190 0.1037777586 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
16 Hb_000712_070 0.1041971914 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000045_230 0.1042071284 - - PREDICTED: uncharacterized acetyltransferase At3g50280 [Jatropha curcas]
18 Hb_003968_020 0.1085265078 - - PREDICTED: limonoid UDP-glucosyltransferase-like [Glycine max]
19 Hb_002521_010 0.1103785301 - - cinnamate 4-hydroxylase, putative [Ricinus communis]
20 Hb_000059_100 0.1106640297 - - Basic blue protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004037_010 Hb_004037_010 Hb_009545_040 Hb_009545_040 Hb_004037_010--Hb_009545_040 Hb_000120_440 Hb_000120_440 Hb_004037_010--Hb_000120_440 Hb_000021_090 Hb_000021_090 Hb_004037_010--Hb_000021_090 Hb_025490_030 Hb_025490_030 Hb_004037_010--Hb_025490_030 Hb_001165_040 Hb_001165_040 Hb_004037_010--Hb_001165_040 Hb_000076_200 Hb_000076_200 Hb_004037_010--Hb_000076_200 Hb_009545_040--Hb_000120_440 Hb_009545_040--Hb_001165_040 Hb_009545_040--Hb_000021_090 Hb_009545_040--Hb_025490_030 Hb_006153_190 Hb_006153_190 Hb_009545_040--Hb_006153_190 Hb_000120_440--Hb_000021_090 Hb_000120_440--Hb_001165_040 Hb_000005_270 Hb_000005_270 Hb_000120_440--Hb_000005_270 Hb_000513_110 Hb_000513_110 Hb_000120_440--Hb_000513_110 Hb_000021_090--Hb_025490_030 Hb_124247_030 Hb_124247_030 Hb_000021_090--Hb_124247_030 Hb_000021_090--Hb_006153_190 Hb_025490_030--Hb_124247_030 Hb_025490_030--Hb_001165_040 Hb_005066_010 Hb_005066_010 Hb_025490_030--Hb_005066_010 Hb_002835_030 Hb_002835_030 Hb_001165_040--Hb_002835_030 Hb_000462_100 Hb_000462_100 Hb_001165_040--Hb_000462_100 Hb_010839_040 Hb_010839_040 Hb_001165_040--Hb_010839_040 Hb_003968_020 Hb_003968_020 Hb_000076_200--Hb_003968_020 Hb_007532_050 Hb_007532_050 Hb_000076_200--Hb_007532_050 Hb_005356_010 Hb_005356_010 Hb_000076_200--Hb_005356_010 Hb_000161_250 Hb_000161_250 Hb_000076_200--Hb_000161_250 Hb_007527_020 Hb_007527_020 Hb_000076_200--Hb_007527_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.14196 0.33305 4.67755 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 58.4595 0.382917

CAGE analysis