Hb_005356_010

Information

Type -
Description -
Location Contig5356: 36952-38014
Sequence    

Annotation

kegg
ID pop:POPTR_0003s16550g
description POPTRDRAFT_413678; hypothetical protein
nr
ID XP_002303768.2
description hypothetical protein POPTR_0003s16550g [Populus trichocarpa]
swissprot
ID O82015
description Major pollen allergen Lig v 1 OS=Ligustrum vulgare PE=1 SV=2
trembl
ID B9GZC8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s16550g PE=4 SV=2
Gene Ontology
ID GO:0016787
description olee1-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005356_010 0.0 - - hypothetical protein POPTR_0003s16550g [Populus trichocarpa]
2 Hb_007527_020 0.0617661917 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
3 Hb_000281_200 0.0698994931 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
4 Hb_000301_030 0.0703512632 - - PREDICTED: pectate lyase-like [Jatropha curcas]
5 Hb_178389_020 0.0801015873 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
6 Hb_001544_040 0.0808766285 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
7 Hb_001288_010 0.0848099579 - - -
8 Hb_003855_070 0.0875052679 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
9 Hb_004564_010 0.0877151851 - - receptor-kinase, putative [Ricinus communis]
10 Hb_039655_010 0.0901895051 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like [Malus domestica]
11 Hb_000076_200 0.0916418803 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000120_440 0.0961833783 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000513_110 0.0967807184 - - PREDICTED: germin-like protein subfamily 1 member 13 [Populus euphratica]
14 Hb_003968_020 0.0974020966 - - PREDICTED: limonoid UDP-glucosyltransferase-like [Glycine max]
15 Hb_002805_230 0.0992203499 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
16 Hb_004037_010 0.1000229297 - - PREDICTED: uncharacterized protein LOC105632369 [Jatropha curcas]
17 Hb_001901_090 0.1032399873 - - metal ion binding protein, putative [Ricinus communis]
18 Hb_007532_050 0.1035252174 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
19 Hb_012660_010 0.1038707624 - - hypothetical protein JCGZ_25971 [Jatropha curcas]
20 Hb_000120_710 0.1043839628 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_005356_010 Hb_005356_010 Hb_007527_020 Hb_007527_020 Hb_005356_010--Hb_007527_020 Hb_000281_200 Hb_000281_200 Hb_005356_010--Hb_000281_200 Hb_000301_030 Hb_000301_030 Hb_005356_010--Hb_000301_030 Hb_178389_020 Hb_178389_020 Hb_005356_010--Hb_178389_020 Hb_001544_040 Hb_001544_040 Hb_005356_010--Hb_001544_040 Hb_001288_010 Hb_001288_010 Hb_005356_010--Hb_001288_010 Hb_002805_230 Hb_002805_230 Hb_007527_020--Hb_002805_230 Hb_007527_020--Hb_000281_200 Hb_007532_050 Hb_007532_050 Hb_007527_020--Hb_007532_050 Hb_000513_110 Hb_000513_110 Hb_007527_020--Hb_000513_110 Hb_007527_020--Hb_001544_040 Hb_000281_200--Hb_001288_010 Hb_003968_020 Hb_003968_020 Hb_000281_200--Hb_003968_020 Hb_000281_200--Hb_178389_020 Hb_039655_010 Hb_039655_010 Hb_000281_200--Hb_039655_010 Hb_003855_070 Hb_003855_070 Hb_000301_030--Hb_003855_070 Hb_012660_010 Hb_012660_010 Hb_000301_030--Hb_012660_010 Hb_107258_010 Hb_107258_010 Hb_000301_030--Hb_107258_010 Hb_000648_120 Hb_000648_120 Hb_000301_030--Hb_000648_120 Hb_011486_030 Hb_011486_030 Hb_000301_030--Hb_011486_030 Hb_004564_010 Hb_004564_010 Hb_178389_020--Hb_004564_010 Hb_001442_080 Hb_001442_080 Hb_178389_020--Hb_001442_080 Hb_178389_020--Hb_001288_010 Hb_178389_020--Hb_107258_010 Hb_002900_020 Hb_002900_020 Hb_178389_020--Hb_002900_020 Hb_000120_710 Hb_000120_710 Hb_001544_040--Hb_000120_710 Hb_010407_120 Hb_010407_120 Hb_001544_040--Hb_010407_120 Hb_003253_020 Hb_003253_020 Hb_001544_040--Hb_003253_020 Hb_000617_340 Hb_000617_340 Hb_001544_040--Hb_000617_340 Hb_001544_040--Hb_000513_110 Hb_001288_010--Hb_012660_010 Hb_001288_010--Hb_004564_010 Hb_001288_010--Hb_001442_080 Hb_001288_010--Hb_003968_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.214497 6.54368 1.22846 6.71435 0.146211 0.0530708
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0596681 0 0 109.881 0.855179

CAGE analysis