Hb_004564_010

Information

Type -
Description -
Location Contig4564: 18221-21573
Sequence    

Annotation

kegg
ID rcu:RCOM_0066150
description receptor-kinase, putative (EC:1.3.1.74)
nr
ID XP_002531424.1
description receptor-kinase, putative [Ricinus communis]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID B9SZK5
description Receptor-kinase, putative OS=Ricinus communis GN=RCOM_0066150 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004564_010 0.0 - - receptor-kinase, putative [Ricinus communis]
2 Hb_178389_020 0.0524733838 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
3 Hb_107258_010 0.0580504213 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
4 Hb_001442_080 0.0606455527 transcription factor TF Family: MYB-related transcription factor MYB251 [Fagus crenata]
5 Hb_001863_290 0.06175558 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
6 Hb_002615_050 0.0639415243 - - ATP-binding cassette transporter, putative [Ricinus communis]
7 Hb_001288_010 0.0725543856 - - -
8 Hb_011824_010 0.0753819718 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
9 Hb_002900_020 0.0783006104 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
10 Hb_010712_020 0.0821826472 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
11 Hb_007810_140 0.0823299617 - - Ankyrin repeat-containing protein [Medicago truncatula]
12 Hb_000160_230 0.0823327724 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
13 Hb_006196_020 0.0833357464 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100-like [Populus euphratica]
14 Hb_042664_010 0.0842724832 - - hypothetical protein POPTR_0001s07640g, partial [Populus trichocarpa]
15 Hb_016172_010 0.087704022 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
16 Hb_005356_010 0.0877151851 - - hypothetical protein POPTR_0003s16550g [Populus trichocarpa]
17 Hb_003855_070 0.0897327538 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
18 Hb_002534_080 0.0909948793 - - zinc finger protein, putative [Ricinus communis]
19 Hb_027402_120 0.0935293384 - - zinc finger protein, putative [Ricinus communis]
20 Hb_000483_020 0.0937786587 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004564_010 Hb_004564_010 Hb_178389_020 Hb_178389_020 Hb_004564_010--Hb_178389_020 Hb_107258_010 Hb_107258_010 Hb_004564_010--Hb_107258_010 Hb_001442_080 Hb_001442_080 Hb_004564_010--Hb_001442_080 Hb_001863_290 Hb_001863_290 Hb_004564_010--Hb_001863_290 Hb_002615_050 Hb_002615_050 Hb_004564_010--Hb_002615_050 Hb_001288_010 Hb_001288_010 Hb_004564_010--Hb_001288_010 Hb_178389_020--Hb_001442_080 Hb_178389_020--Hb_001288_010 Hb_005356_010 Hb_005356_010 Hb_178389_020--Hb_005356_010 Hb_178389_020--Hb_107258_010 Hb_002900_020 Hb_002900_020 Hb_178389_020--Hb_002900_020 Hb_107258_010--Hb_001863_290 Hb_107258_010--Hb_001442_080 Hb_011824_010 Hb_011824_010 Hb_107258_010--Hb_011824_010 Hb_012660_010 Hb_012660_010 Hb_107258_010--Hb_012660_010 Hb_010712_020 Hb_010712_020 Hb_107258_010--Hb_010712_020 Hb_001442_080--Hb_001863_290 Hb_064398_010 Hb_064398_010 Hb_001442_080--Hb_064398_010 Hb_000483_020 Hb_000483_020 Hb_001442_080--Hb_000483_020 Hb_001863_290--Hb_011824_010 Hb_001863_290--Hb_010712_020 Hb_001863_290--Hb_064398_010 Hb_007810_140 Hb_007810_140 Hb_002615_050--Hb_007810_140 Hb_000160_230 Hb_000160_230 Hb_002615_050--Hb_000160_230 Hb_006196_020 Hb_006196_020 Hb_002615_050--Hb_006196_020 Hb_002615_050--Hb_011824_010 Hb_000859_040 Hb_000859_040 Hb_002615_050--Hb_000859_040 Hb_139460_010 Hb_139460_010 Hb_002615_050--Hb_139460_010 Hb_000281_200 Hb_000281_200 Hb_001288_010--Hb_000281_200 Hb_001288_010--Hb_012660_010 Hb_001288_010--Hb_001442_080 Hb_003968_020 Hb_003968_020 Hb_001288_010--Hb_003968_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.689263 0.0534348 0.227262 0 0.00509913
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 7.20598 0.0445168

CAGE analysis