Hb_002900_020

Information

Type -
Description -
Location Contig2900: 42759-48584
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06270g
description hypothetical protein
nr
ID XP_006379614.1
description hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
swissprot
ID F8WKW1
description 7-deoxyloganetin glucosyltransferase OS=Gardenia jasminoides GN=UGT85A24 PE=1 SV=1
trembl
ID U5G561
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s06270g PE=3 SV=1
Gene Ontology
ID GO:0016758
description udp-glucosyltransferase family 1 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30393: 43549-44214 , PASA_asmbl_30394: 47749-48188
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002900_020 0.0 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
2 Hb_000488_040 0.0477886884 - - unnamed protein product [Vitis vinifera]
3 Hb_004592_020 0.050871983 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
4 Hb_000483_020 0.0554841175 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
5 Hb_009780_060 0.0679952488 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
6 Hb_004564_010 0.0783006104 - - receptor-kinase, putative [Ricinus communis]
7 Hb_001032_060 0.0794962474 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
8 Hb_018709_010 0.0812534924 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
9 Hb_178389_020 0.0840337572 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
10 Hb_006196_020 0.0852301745 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100-like [Populus euphratica]
11 Hb_001442_080 0.0883827419 transcription factor TF Family: MYB-related transcription factor MYB251 [Fagus crenata]
12 Hb_028013_010 0.0885843899 - - alcohol dehydrogenase, putative [Ricinus communis]
13 Hb_000419_080 0.088586224 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
14 Hb_000445_020 0.0886383207 - - GABA-specific permease, putative [Ricinus communis]
15 Hb_000025_250 0.0889587836 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
16 Hb_001114_220 0.093962038 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
17 Hb_064398_010 0.09454442 - - cytochrome P450, putative [Ricinus communis]
18 Hb_000537_120 0.0968760015 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
19 Hb_032717_030 0.0980987536 - - PREDICTED: CASP-like protein 1B2 [Jatropha curcas]
20 Hb_001863_290 0.0981535884 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]

Gene co-expression network

sample Hb_002900_020 Hb_002900_020 Hb_000488_040 Hb_000488_040 Hb_002900_020--Hb_000488_040 Hb_004592_020 Hb_004592_020 Hb_002900_020--Hb_004592_020 Hb_000483_020 Hb_000483_020 Hb_002900_020--Hb_000483_020 Hb_009780_060 Hb_009780_060 Hb_002900_020--Hb_009780_060 Hb_004564_010 Hb_004564_010 Hb_002900_020--Hb_004564_010 Hb_001032_060 Hb_001032_060 Hb_002900_020--Hb_001032_060 Hb_000488_040--Hb_004592_020 Hb_000488_040--Hb_001032_060 Hb_000419_080 Hb_000419_080 Hb_000488_040--Hb_000419_080 Hb_018709_010 Hb_018709_010 Hb_000488_040--Hb_018709_010 Hb_005747_020 Hb_005747_020 Hb_000488_040--Hb_005747_020 Hb_004592_020--Hb_001032_060 Hb_004592_020--Hb_000419_080 Hb_004592_020--Hb_000483_020 Hb_004592_020--Hb_018709_010 Hb_000483_020--Hb_000488_040 Hb_001442_080 Hb_001442_080 Hb_000483_020--Hb_001442_080 Hb_032717_030 Hb_032717_030 Hb_000483_020--Hb_032717_030 Hb_178389_020 Hb_178389_020 Hb_000483_020--Hb_178389_020 Hb_009780_060--Hb_004592_020 Hb_005433_050 Hb_005433_050 Hb_009780_060--Hb_005433_050 Hb_000229_080 Hb_000229_080 Hb_009780_060--Hb_000229_080 Hb_000445_020 Hb_000445_020 Hb_009780_060--Hb_000445_020 Hb_000025_250 Hb_000025_250 Hb_009780_060--Hb_000025_250 Hb_004564_010--Hb_178389_020 Hb_107258_010 Hb_107258_010 Hb_004564_010--Hb_107258_010 Hb_004564_010--Hb_001442_080 Hb_001863_290 Hb_001863_290 Hb_004564_010--Hb_001863_290 Hb_002615_050 Hb_002615_050 Hb_004564_010--Hb_002615_050 Hb_001288_010 Hb_001288_010 Hb_004564_010--Hb_001288_010 Hb_001032_060--Hb_000419_080 Hb_001032_060--Hb_005747_020 Hb_094462_010 Hb_094462_010 Hb_001032_060--Hb_094462_010 Hb_001032_060--Hb_018709_010 Hb_000022_270 Hb_000022_270 Hb_001032_060--Hb_000022_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.84569 0.243615 0.35469 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0724996 0.0142621 0 43.9567 0.363594

CAGE analysis