Hb_000488_040

Information

Type -
Description -
Location Contig488: 46478-63089
Sequence    

Annotation

kegg
ID mtr:MTR_6g014186
description Glucosyltransferase
nr
ID CBI31579.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A0A059ACW1
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00973 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45087: 59656-59760 , PASA_asmbl_45089: 60063-61509
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000488_040 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_004592_020 0.0408050559 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
3 Hb_002900_020 0.0477886884 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
4 Hb_001032_060 0.0551530633 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
5 Hb_000419_080 0.0562253624 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
6 Hb_018709_010 0.0666998818 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
7 Hb_005747_020 0.0708433378 - - bacterial-induced peroxidase [Gossypium schwendimanii]
8 Hb_028013_010 0.0733852145 - - alcohol dehydrogenase, putative [Ricinus communis]
9 Hb_094462_010 0.0754971822 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
10 Hb_000563_070 0.076377062 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Sesamum indicum]
11 Hb_001410_090 0.0766318179 - - transferase, putative [Ricinus communis]
12 Hb_000264_250 0.0792602663 - - thioredoxin family protein [Arabidopsis thaliana]
13 Hb_001114_220 0.0797004015 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
14 Hb_000483_020 0.0801536558 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
15 Hb_006196_020 0.0823094828 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100-like [Populus euphratica]
16 Hb_002551_010 0.0835151699 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000859_040 0.0843342648 - - Early nodulin 16 precursor, putative [Ricinus communis]
18 Hb_000022_270 0.0868697447 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007810_140 0.0873062605 - - Ankyrin repeat-containing protein [Medicago truncatula]
20 Hb_003685_060 0.0881921044 - - PREDICTED: laccase-15 [Jatropha curcas]

Gene co-expression network

sample Hb_000488_040 Hb_000488_040 Hb_004592_020 Hb_004592_020 Hb_000488_040--Hb_004592_020 Hb_002900_020 Hb_002900_020 Hb_000488_040--Hb_002900_020 Hb_001032_060 Hb_001032_060 Hb_000488_040--Hb_001032_060 Hb_000419_080 Hb_000419_080 Hb_000488_040--Hb_000419_080 Hb_018709_010 Hb_018709_010 Hb_000488_040--Hb_018709_010 Hb_005747_020 Hb_005747_020 Hb_000488_040--Hb_005747_020 Hb_004592_020--Hb_002900_020 Hb_004592_020--Hb_001032_060 Hb_004592_020--Hb_000419_080 Hb_000483_020 Hb_000483_020 Hb_004592_020--Hb_000483_020 Hb_004592_020--Hb_018709_010 Hb_002900_020--Hb_000483_020 Hb_009780_060 Hb_009780_060 Hb_002900_020--Hb_009780_060 Hb_004564_010 Hb_004564_010 Hb_002900_020--Hb_004564_010 Hb_002900_020--Hb_001032_060 Hb_001032_060--Hb_000419_080 Hb_001032_060--Hb_005747_020 Hb_094462_010 Hb_094462_010 Hb_001032_060--Hb_094462_010 Hb_001032_060--Hb_018709_010 Hb_000022_270 Hb_000022_270 Hb_001032_060--Hb_000022_270 Hb_000419_080--Hb_094462_010 Hb_000563_070 Hb_000563_070 Hb_000419_080--Hb_000563_070 Hb_000264_250 Hb_000264_250 Hb_000419_080--Hb_000264_250 Hb_000419_080--Hb_005747_020 Hb_000419_080--Hb_000022_270 Hb_028013_010 Hb_028013_010 Hb_018709_010--Hb_028013_010 Hb_020141_020 Hb_020141_020 Hb_018709_010--Hb_020141_020 Hb_000025_250 Hb_000025_250 Hb_018709_010--Hb_000025_250 Hb_100786_010 Hb_100786_010 Hb_018709_010--Hb_100786_010 Hb_018709_010--Hb_000419_080 Hb_005747_020--Hb_000563_070 Hb_005747_020--Hb_000264_250 Hb_002551_010 Hb_002551_010 Hb_005747_020--Hb_002551_010 Hb_106528_010 Hb_106528_010 Hb_005747_020--Hb_106528_010 Hb_005747_020--Hb_094462_010 Hb_005747_040 Hb_005747_040 Hb_005747_020--Hb_005747_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.17478 0.0247336 0.0752686 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0293791 0 0 12.5404 0.0246581

CAGE analysis