Hb_001032_060

Information

Type -
Description -
Location Contig1032: 76271-84282
Sequence    

Annotation

kegg
ID cit:102621368
description ankyrin-2-like
nr
ID XP_006494668.1
description PREDICTED: ankyrin-2-like [Citrus sinensis]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID V4VRN2
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10024088mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001032_060 0.0 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
2 Hb_000419_080 0.0399994817 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
3 Hb_005747_020 0.0465079126 - - bacterial-induced peroxidase [Gossypium schwendimanii]
4 Hb_094462_010 0.0473707953 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
5 Hb_018709_010 0.0519757095 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
6 Hb_000022_270 0.0549867263 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000488_040 0.0551530633 - - unnamed protein product [Vitis vinifera]
8 Hb_003685_060 0.0563421107 - - PREDICTED: laccase-15 [Jatropha curcas]
9 Hb_000563_070 0.0570680577 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Sesamum indicum]
10 Hb_001604_140 0.057940936 - - PREDICTED: ABC transporter G family member 10-like [Populus euphratica]
11 Hb_028013_010 0.0579986577 - - alcohol dehydrogenase, putative [Ricinus communis]
12 Hb_000201_080 0.0607854063 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
13 Hb_004592_020 0.0627922213 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
14 Hb_000264_250 0.0636050527 - - thioredoxin family protein [Arabidopsis thaliana]
15 Hb_126040_020 0.0640472671 - - -
16 Hb_002551_010 0.0713263992 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_001675_210 0.074573832 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
18 Hb_000025_250 0.0760919257 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
19 Hb_106528_010 0.078805926 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
20 Hb_000405_040 0.078970925 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]

Gene co-expression network

sample Hb_001032_060 Hb_001032_060 Hb_000419_080 Hb_000419_080 Hb_001032_060--Hb_000419_080 Hb_005747_020 Hb_005747_020 Hb_001032_060--Hb_005747_020 Hb_094462_010 Hb_094462_010 Hb_001032_060--Hb_094462_010 Hb_018709_010 Hb_018709_010 Hb_001032_060--Hb_018709_010 Hb_000022_270 Hb_000022_270 Hb_001032_060--Hb_000022_270 Hb_000488_040 Hb_000488_040 Hb_001032_060--Hb_000488_040 Hb_000419_080--Hb_094462_010 Hb_000563_070 Hb_000563_070 Hb_000419_080--Hb_000563_070 Hb_000264_250 Hb_000264_250 Hb_000419_080--Hb_000264_250 Hb_000419_080--Hb_005747_020 Hb_000419_080--Hb_000022_270 Hb_005747_020--Hb_000563_070 Hb_005747_020--Hb_000264_250 Hb_002551_010 Hb_002551_010 Hb_005747_020--Hb_002551_010 Hb_106528_010 Hb_106528_010 Hb_005747_020--Hb_106528_010 Hb_005747_020--Hb_094462_010 Hb_005747_040 Hb_005747_040 Hb_005747_020--Hb_005747_040 Hb_094462_010--Hb_000563_070 Hb_094462_010--Hb_000022_270 Hb_003685_060 Hb_003685_060 Hb_094462_010--Hb_003685_060 Hb_094462_010--Hb_000264_250 Hb_001604_140 Hb_001604_140 Hb_094462_010--Hb_001604_140 Hb_028013_010 Hb_028013_010 Hb_018709_010--Hb_028013_010 Hb_020141_020 Hb_020141_020 Hb_018709_010--Hb_020141_020 Hb_000025_250 Hb_000025_250 Hb_018709_010--Hb_000025_250 Hb_100786_010 Hb_100786_010 Hb_018709_010--Hb_100786_010 Hb_018709_010--Hb_000419_080 Hb_000022_270--Hb_003685_060 Hb_000022_270--Hb_001604_140 Hb_000201_080 Hb_000201_080 Hb_000022_270--Hb_000201_080 Hb_126040_020 Hb_126040_020 Hb_000022_270--Hb_126040_020 Hb_001675_210 Hb_001675_210 Hb_000022_270--Hb_001675_210 Hb_004592_020 Hb_004592_020 Hb_000488_040--Hb_004592_020 Hb_002900_020 Hb_002900_020 Hb_000488_040--Hb_002900_020 Hb_000488_040--Hb_000419_080 Hb_000488_040--Hb_018709_010 Hb_000488_040--Hb_005747_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.499173 0.0183325 0.0111712 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 6.12952 0

CAGE analysis