Hb_004592_020

Information

Type -
Description -
Location Contig4592: 25585-26743
Sequence    

Annotation

kegg
ID tcc:TCM_042285
description Non-specific lipid-transfer protein, putative
nr
ID XP_012077985.1
description PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
swissprot
ID Q43017
description Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1
trembl
ID A0A067LEN1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17295 PE=4 SV=1
Gene Ontology
ID GO:0008289
description non-specific lipid-transfer protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43586: 25636-26431
cDNA
(Sanger)
(ID:Location)		 011_D14.ab1: 25706-26433 , 011_K14.ab1: 25713-26431 , 013_G03.ab1: 25714-26431 , 015_J24.ab1: 25713-25861 , 015_L01.ab1: 25712-26431 , 016_E09.ab1: 25714-26431 , 018_A05.ab1: 25706-26427 , 018_J21.ab1: 25714-26431 , 023_N05.ab1: 25714-26431 , 025_H15.ab1: 25714-26431 , 026_J20.ab1: 25714-26431 , 031_P02.ab1: 25714-26431 , 033_C17.ab1: 25714-26431 , 033_L16.ab1: 25679-26431 , 035_N19.ab1: 25697-26431 , 041_M21.ab1: 25712-26428 , 045_I05.ab1: 25702-26431 , 046_M18.ab1: 25697-26431 , 047_F15.ab1: 25636-26431 , 048_N12.ab1: 25715-26431 , 049_E09.ab1: 25714-26431 , 050_M11.ab1: 25662-26431 , 053_D05.ab1: 25706-26432

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004592_020 0.0 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
2 Hb_000488_040 0.0408050559 - - unnamed protein product [Vitis vinifera]
3 Hb_002900_020 0.050871983 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
4 Hb_001032_060 0.0627922213 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
5 Hb_000419_080 0.0648458134 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
6 Hb_000483_020 0.0688845301 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
7 Hb_018709_010 0.0726018974 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
8 Hb_028013_010 0.0736962751 - - alcohol dehydrogenase, putative [Ricinus communis]
9 Hb_094462_010 0.0737276343 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
10 Hb_009780_060 0.074362415 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
11 Hb_000022_270 0.0756603131 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003685_060 0.0764052581 - - PREDICTED: laccase-15 [Jatropha curcas]
13 Hb_001604_140 0.0773222123 - - PREDICTED: ABC transporter G family member 10-like [Populus euphratica]
14 Hb_001114_220 0.0782510126 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
15 Hb_000201_080 0.0790399527 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
16 Hb_000445_020 0.0791271667 - - GABA-specific permease, putative [Ricinus communis]
17 Hb_126040_020 0.0811237445 - - -
18 Hb_005747_020 0.0811681062 - - bacterial-induced peroxidase [Gossypium schwendimanii]
19 Hb_000563_070 0.0827217679 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Sesamum indicum]
20 Hb_032717_030 0.0841374364 - - PREDICTED: CASP-like protein 1B2 [Jatropha curcas]

Gene co-expression network

sample Hb_004592_020 Hb_004592_020 Hb_000488_040 Hb_000488_040 Hb_004592_020--Hb_000488_040 Hb_002900_020 Hb_002900_020 Hb_004592_020--Hb_002900_020 Hb_001032_060 Hb_001032_060 Hb_004592_020--Hb_001032_060 Hb_000419_080 Hb_000419_080 Hb_004592_020--Hb_000419_080 Hb_000483_020 Hb_000483_020 Hb_004592_020--Hb_000483_020 Hb_018709_010 Hb_018709_010 Hb_004592_020--Hb_018709_010 Hb_000488_040--Hb_002900_020 Hb_000488_040--Hb_001032_060 Hb_000488_040--Hb_000419_080 Hb_000488_040--Hb_018709_010 Hb_005747_020 Hb_005747_020 Hb_000488_040--Hb_005747_020 Hb_002900_020--Hb_000483_020 Hb_009780_060 Hb_009780_060 Hb_002900_020--Hb_009780_060 Hb_004564_010 Hb_004564_010 Hb_002900_020--Hb_004564_010 Hb_002900_020--Hb_001032_060 Hb_001032_060--Hb_000419_080 Hb_001032_060--Hb_005747_020 Hb_094462_010 Hb_094462_010 Hb_001032_060--Hb_094462_010 Hb_001032_060--Hb_018709_010 Hb_000022_270 Hb_000022_270 Hb_001032_060--Hb_000022_270 Hb_000419_080--Hb_094462_010 Hb_000563_070 Hb_000563_070 Hb_000419_080--Hb_000563_070 Hb_000264_250 Hb_000264_250 Hb_000419_080--Hb_000264_250 Hb_000419_080--Hb_005747_020 Hb_000419_080--Hb_000022_270 Hb_000483_020--Hb_000488_040 Hb_001442_080 Hb_001442_080 Hb_000483_020--Hb_001442_080 Hb_032717_030 Hb_032717_030 Hb_000483_020--Hb_032717_030 Hb_178389_020 Hb_178389_020 Hb_000483_020--Hb_178389_020 Hb_028013_010 Hb_028013_010 Hb_018709_010--Hb_028013_010 Hb_020141_020 Hb_020141_020 Hb_018709_010--Hb_020141_020 Hb_000025_250 Hb_000025_250 Hb_018709_010--Hb_000025_250 Hb_100786_010 Hb_100786_010 Hb_018709_010--Hb_100786_010 Hb_018709_010--Hb_000419_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0210162 71.7506 0.935479 2.79663 0 0.0185014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.92401 0.151328 0.279292 941.758 4.65736

CAGE analysis