Hb_028013_010

Information

Type -
Description -
Location Contig28013: 11696-13946
Sequence    

Annotation

kegg
ID rcu:RCOM_0605880
description alcohol dehydrogenase, putative (EC:1.3.1.74)
nr
ID XP_002529813.1
description alcohol dehydrogenase, putative [Ricinus communis]
swissprot
ID Q39173
description NADP-dependent alkenal double bond reductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2
trembl
ID B9SUZ4
description Alcohol dehydrogenase, putative OS=Ricinus communis GN=RCOM_0605880 PE=4 SV=1
Gene Ontology
ID GO:0008270
description 2-alkenal reductase (nadp(+)-dependent)-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028013_010 0.0 - - alcohol dehydrogenase, putative [Ricinus communis]
2 Hb_018709_010 0.0368978316 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
3 Hb_020141_020 0.0501361629 - - -
4 Hb_001032_060 0.0579986577 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
5 Hb_000025_250 0.0580336883 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
6 Hb_100786_010 0.0606682541 - - hypothetical protein B456_008G202600 [Gossypium raimondii]
7 Hb_000419_080 0.068242047 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
8 Hb_000201_080 0.071376087 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
9 Hb_001604_140 0.0713850322 - - PREDICTED: ABC transporter G family member 10-like [Populus euphratica]
10 Hb_003685_060 0.0715393043 - - PREDICTED: laccase-15 [Jatropha curcas]
11 Hb_126040_020 0.0717044277 - - -
12 Hb_000022_270 0.0717733719 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000488_040 0.0733852145 - - unnamed protein product [Vitis vinifera]
14 Hb_004592_020 0.0736962751 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
15 Hb_014034_020 0.0750615302 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
16 Hb_000828_030 0.0761259847 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
17 Hb_000563_080 0.0774890183 - - -
18 Hb_010358_010 0.0781961853 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
19 Hb_000589_280 0.0789957413 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
20 Hb_003188_020 0.0806645385 - - chitinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_028013_010 Hb_028013_010 Hb_018709_010 Hb_018709_010 Hb_028013_010--Hb_018709_010 Hb_020141_020 Hb_020141_020 Hb_028013_010--Hb_020141_020 Hb_001032_060 Hb_001032_060 Hb_028013_010--Hb_001032_060 Hb_000025_250 Hb_000025_250 Hb_028013_010--Hb_000025_250 Hb_100786_010 Hb_100786_010 Hb_028013_010--Hb_100786_010 Hb_000419_080 Hb_000419_080 Hb_028013_010--Hb_000419_080 Hb_018709_010--Hb_020141_020 Hb_018709_010--Hb_000025_250 Hb_018709_010--Hb_100786_010 Hb_018709_010--Hb_001032_060 Hb_018709_010--Hb_000419_080 Hb_000563_080 Hb_000563_080 Hb_020141_020--Hb_000563_080 Hb_003188_020 Hb_003188_020 Hb_020141_020--Hb_003188_020 Hb_010358_010 Hb_010358_010 Hb_020141_020--Hb_010358_010 Hb_153208_010 Hb_153208_010 Hb_020141_020--Hb_153208_010 Hb_014034_020 Hb_014034_020 Hb_020141_020--Hb_014034_020 Hb_001032_060--Hb_000419_080 Hb_005747_020 Hb_005747_020 Hb_001032_060--Hb_005747_020 Hb_094462_010 Hb_094462_010 Hb_001032_060--Hb_094462_010 Hb_000022_270 Hb_000022_270 Hb_001032_060--Hb_000022_270 Hb_000488_040 Hb_000488_040 Hb_001032_060--Hb_000488_040 Hb_000025_250--Hb_014034_020 Hb_004254_070 Hb_004254_070 Hb_000025_250--Hb_004254_070 Hb_000025_250--Hb_020141_020 Hb_005464_040 Hb_005464_040 Hb_000025_250--Hb_005464_040 Hb_000025_250--Hb_000563_080 Hb_000589_280 Hb_000589_280 Hb_100786_010--Hb_000589_280 Hb_010839_040 Hb_010839_040 Hb_100786_010--Hb_010839_040 Hb_100786_010--Hb_020141_020 Hb_000462_100 Hb_000462_100 Hb_100786_010--Hb_000462_100 Hb_002835_030 Hb_002835_030 Hb_100786_010--Hb_002835_030 Hb_000419_080--Hb_094462_010 Hb_000563_070 Hb_000563_070 Hb_000419_080--Hb_000563_070 Hb_000264_250 Hb_000264_250 Hb_000419_080--Hb_000264_250 Hb_000419_080--Hb_005747_020 Hb_000419_080--Hb_000022_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.370757 11.067 0.427113 1.17253 0.0485049 0.029628
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0384976 0 0 192.626 0

CAGE analysis