Hb_003188_020

Information

Type -
Description -
Location Contig3188: 8678-9772
Sequence    

Annotation

kegg
ID rcu:RCOM_0701160
description chitinase, putative
nr
ID XP_002523518.1
description chitinase, putative [Ricinus communis]
swissprot
ID Q9D7Q1
description Chitotriosidase-1 OS=Mus musculus GN=Chit1 PE=1 SV=2
trembl
ID B9SBZ9
description Chitinase, putative OS=Ricinus communis GN=RCOM_0701160 PE=3 SV=1
Gene Ontology
ID GO:0005576
description glycosyl hydrolase family protein with chitinase insertion domain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33648: 8846-9134 , PASA_asmbl_33649: 9462-10416
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003188_020 0.0 - - chitinase, putative [Ricinus communis]
2 Hb_001301_020 0.0210788109 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
3 Hb_000563_080 0.0240826643 - - -
4 Hb_014034_020 0.0272862294 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
5 Hb_004254_070 0.0290114256 transcription factor TF Family: NAC hypothetical protein POPTR_0015s03700g [Populus trichocarpa]
6 Hb_000446_100 0.0331316236 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
7 Hb_153208_010 0.033772895 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
8 Hb_000500_190 0.0363150794 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
9 Hb_020141_020 0.0451262434 - - -
10 Hb_166232_010 0.0504159005 - - hypothetical protein JCGZ_22831 [Jatropha curcas]
11 Hb_000025_250 0.0507592552 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
12 Hb_005464_040 0.0537544022 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_002553_170 0.054331849 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
14 Hb_002944_020 0.0559517248 transcription factor TF Family: bZIP hypothetical protein POPTR_0006s05770g, partial [Populus trichocarpa]
15 Hb_001456_040 0.0574594526 - - NAD dependent epimerase/dehydratase, putative [Ricinus communis]
16 Hb_002835_020 0.0574969147 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
17 Hb_000229_080 0.0599713151 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
18 Hb_010358_010 0.0601810541 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
19 Hb_000563_060 0.0630592908 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
20 Hb_001930_060 0.0632682414 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_003188_020 Hb_003188_020 Hb_001301_020 Hb_001301_020 Hb_003188_020--Hb_001301_020 Hb_000563_080 Hb_000563_080 Hb_003188_020--Hb_000563_080 Hb_014034_020 Hb_014034_020 Hb_003188_020--Hb_014034_020 Hb_004254_070 Hb_004254_070 Hb_003188_020--Hb_004254_070 Hb_000446_100 Hb_000446_100 Hb_003188_020--Hb_000446_100 Hb_153208_010 Hb_153208_010 Hb_003188_020--Hb_153208_010 Hb_001301_020--Hb_000563_080 Hb_001301_020--Hb_000446_100 Hb_001301_020--Hb_004254_070 Hb_005464_040 Hb_005464_040 Hb_001301_020--Hb_005464_040 Hb_001301_020--Hb_014034_020 Hb_000563_080--Hb_005464_040 Hb_166232_010 Hb_166232_010 Hb_000563_080--Hb_166232_010 Hb_000563_080--Hb_004254_070 Hb_000563_080--Hb_000446_100 Hb_014034_020--Hb_004254_070 Hb_000500_190 Hb_000500_190 Hb_014034_020--Hb_000500_190 Hb_014034_020--Hb_000446_100 Hb_000025_250 Hb_000025_250 Hb_014034_020--Hb_000025_250 Hb_004254_070--Hb_000446_100 Hb_004254_070--Hb_000500_190 Hb_004254_070--Hb_000025_250 Hb_000446_100--Hb_000500_190 Hb_001456_040 Hb_001456_040 Hb_000446_100--Hb_001456_040 Hb_002944_020 Hb_002944_020 Hb_153208_010--Hb_002944_020 Hb_109163_010 Hb_109163_010 Hb_153208_010--Hb_109163_010 Hb_010358_010 Hb_010358_010 Hb_153208_010--Hb_010358_010 Hb_153208_010--Hb_014034_020 Hb_000563_060 Hb_000563_060 Hb_153208_010--Hb_000563_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.313463 0.0888811 0.125351 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 11.6578 0

CAGE analysis