Hb_000563_080

Information

Type -
Description -
Location Contig563: 30688-31207
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_080 0.0 - - -
2 Hb_001301_020 0.0163119747 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
3 Hb_003188_020 0.0240826643 - - chitinase, putative [Ricinus communis]
4 Hb_005464_040 0.0344829221 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_166232_010 0.0368945331 - - hypothetical protein JCGZ_22831 [Jatropha curcas]
6 Hb_004254_070 0.0432547429 transcription factor TF Family: NAC hypothetical protein POPTR_0015s03700g [Populus trichocarpa]
7 Hb_000446_100 0.0441663281 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
8 Hb_020141_020 0.0450639156 - - -
9 Hb_014034_020 0.045816667 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
10 Hb_153208_010 0.0492261734 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
11 Hb_000025_250 0.049329451 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
12 Hb_000500_190 0.0548119344 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
13 Hb_001930_060 0.057820969 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
14 Hb_002758_020 0.0600067946 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
15 Hb_002553_170 0.0609972245 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
16 Hb_100786_010 0.0647066964 - - hypothetical protein B456_008G202600 [Gossypium raimondii]
17 Hb_002835_030 0.0649100156 - - PREDICTED: lysM domain receptor-like kinase 4 [Vitis vinifera]
18 Hb_002835_020 0.0654050205 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
19 Hb_018709_010 0.0657917511 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
20 Hb_000589_280 0.0661531048 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000563_080 Hb_000563_080 Hb_001301_020 Hb_001301_020 Hb_000563_080--Hb_001301_020 Hb_003188_020 Hb_003188_020 Hb_000563_080--Hb_003188_020 Hb_005464_040 Hb_005464_040 Hb_000563_080--Hb_005464_040 Hb_166232_010 Hb_166232_010 Hb_000563_080--Hb_166232_010 Hb_004254_070 Hb_004254_070 Hb_000563_080--Hb_004254_070 Hb_000446_100 Hb_000446_100 Hb_000563_080--Hb_000446_100 Hb_001301_020--Hb_003188_020 Hb_001301_020--Hb_000446_100 Hb_001301_020--Hb_004254_070 Hb_001301_020--Hb_005464_040 Hb_014034_020 Hb_014034_020 Hb_001301_020--Hb_014034_020 Hb_003188_020--Hb_014034_020 Hb_003188_020--Hb_004254_070 Hb_003188_020--Hb_000446_100 Hb_153208_010 Hb_153208_010 Hb_003188_020--Hb_153208_010 Hb_000025_250 Hb_000025_250 Hb_005464_040--Hb_000025_250 Hb_005464_040--Hb_003188_020 Hb_005464_040--Hb_166232_010 Hb_005464_040--Hb_000446_100 Hb_001930_060 Hb_001930_060 Hb_166232_010--Hb_001930_060 Hb_166232_010--Hb_001301_020 Hb_002758_020 Hb_002758_020 Hb_166232_010--Hb_002758_020 Hb_166232_010--Hb_003188_020 Hb_002835_030 Hb_002835_030 Hb_166232_010--Hb_002835_030 Hb_004254_070--Hb_014034_020 Hb_004254_070--Hb_000446_100 Hb_000500_190 Hb_000500_190 Hb_004254_070--Hb_000500_190 Hb_004254_070--Hb_000025_250 Hb_000446_100--Hb_000500_190 Hb_000446_100--Hb_014034_020 Hb_001456_040 Hb_001456_040 Hb_000446_100--Hb_001456_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.99784 0.558205 1.55221 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 95.421 0

CAGE analysis