Hb_002835_030

Information

Type -
Description -
Location Contig2835: 27503-29302
Sequence    

Annotation

kegg
ID vvi:100248488
description lysM domain receptor-like kinase 4
nr
ID XP_002276830.3
description PREDICTED: lysM domain receptor-like kinase 4 [Vitis vinifera]
swissprot
ID O64825
description LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana GN=LYK4 PE=1 SV=1
trembl
ID A0A068UW23
description Coffea canephora DH200=94 genomic scaffold, scaffold_70 OS=Coffea canephora GN=GSCOC_T00037304001 PE=4 SV=1
Gene Ontology
ID GO:0004672
description lysm domain receptor-like kinase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_030 0.0 - - PREDICTED: lysM domain receptor-like kinase 4 [Vitis vinifera]
2 Hb_010839_040 0.0160208668 - - hypothetical protein JCGZ_20868 [Jatropha curcas]
3 Hb_000462_100 0.020982773 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
4 Hb_002758_020 0.0252027607 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
5 Hb_000589_280 0.0366838423 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
6 Hb_166232_010 0.0528427518 - - hypothetical protein JCGZ_22831 [Jatropha curcas]
7 Hb_100786_010 0.0559270347 - - hypothetical protein B456_008G202600 [Gossypium raimondii]
8 Hb_000563_080 0.0649100156 - - -
9 Hb_001165_040 0.0665514327 - - hypothetical protein POPTR_0009s10120g [Populus trichocarpa]
10 Hb_005464_040 0.0685933549 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_001301_020 0.0762126391 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
12 Hb_001930_060 0.076933668 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
13 Hb_020141_020 0.0792267737 - - -
14 Hb_003188_020 0.0839066981 - - chitinase, putative [Ricinus communis]
15 Hb_020025_020 0.0873998201 - - SENESCENCE-RELATED GENE 1 family protein [Populus trichocarpa]
16 Hb_153208_010 0.090920724 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
17 Hb_018709_010 0.0910888751 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
18 Hb_032717_030 0.0974520055 - - PREDICTED: CASP-like protein 1B2 [Jatropha curcas]
19 Hb_000025_250 0.0976330145 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
20 Hb_109163_010 0.0977268645 - - polyphenol oxidase [Hevea brasiliensis]

Gene co-expression network

sample Hb_002835_030 Hb_002835_030 Hb_010839_040 Hb_010839_040 Hb_002835_030--Hb_010839_040 Hb_000462_100 Hb_000462_100 Hb_002835_030--Hb_000462_100 Hb_002758_020 Hb_002758_020 Hb_002835_030--Hb_002758_020 Hb_000589_280 Hb_000589_280 Hb_002835_030--Hb_000589_280 Hb_166232_010 Hb_166232_010 Hb_002835_030--Hb_166232_010 Hb_100786_010 Hb_100786_010 Hb_002835_030--Hb_100786_010 Hb_010839_040--Hb_000462_100 Hb_010839_040--Hb_000589_280 Hb_010839_040--Hb_002758_020 Hb_010839_040--Hb_100786_010 Hb_010839_040--Hb_166232_010 Hb_000462_100--Hb_000589_280 Hb_000462_100--Hb_002758_020 Hb_000462_100--Hb_100786_010 Hb_005464_040 Hb_005464_040 Hb_000462_100--Hb_005464_040 Hb_002758_020--Hb_166232_010 Hb_002758_020--Hb_000589_280 Hb_000563_080 Hb_000563_080 Hb_002758_020--Hb_000563_080 Hb_000589_280--Hb_100786_010 Hb_000589_280--Hb_005464_040 Hb_166232_010--Hb_000563_080 Hb_001930_060 Hb_001930_060 Hb_166232_010--Hb_001930_060 Hb_001301_020 Hb_001301_020 Hb_166232_010--Hb_001301_020 Hb_003188_020 Hb_003188_020 Hb_166232_010--Hb_003188_020 Hb_018709_010 Hb_018709_010 Hb_100786_010--Hb_018709_010 Hb_020141_020 Hb_020141_020 Hb_100786_010--Hb_020141_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00922079 0 0.00867446 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.286357 0

CAGE analysis