Hb_020141_020

Information

Type -
Description -
Location Contig20141: 5234-6642
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20474: 5152-6565
cDNA
(Sanger)
(ID:Location)		 032_I09.ab1: 5146-6132

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020141_020 0.0 - - -
2 Hb_018709_010 0.0405076497 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
3 Hb_000563_080 0.0450639156 - - -
4 Hb_003188_020 0.0451262434 - - chitinase, putative [Ricinus communis]
5 Hb_010358_010 0.047397904 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
6 Hb_153208_010 0.0478025829 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
7 Hb_014034_020 0.0478552156 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
8 Hb_100786_010 0.0485382644 - - hypothetical protein B456_008G202600 [Gossypium raimondii]
9 Hb_000025_250 0.0486521244 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
10 Hb_028013_010 0.0501361629 - - alcohol dehydrogenase, putative [Ricinus communis]
11 Hb_001301_020 0.0561800549 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
12 Hb_000828_030 0.0576443046 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
13 Hb_106528_020 0.0584415704 - - Cationic peroxidase 2 precursor [Theobroma cacao]
14 Hb_004254_070 0.0596386788 transcription factor TF Family: NAC hypothetical protein POPTR_0015s03700g [Populus trichocarpa]
15 Hb_002944_020 0.0627459966 transcription factor TF Family: bZIP hypothetical protein POPTR_0006s05770g, partial [Populus trichocarpa]
16 Hb_000500_190 0.0654571113 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
17 Hb_005464_040 0.0661417149 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000589_280 0.0662957169 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
19 Hb_004981_020 0.0676164992 - - PREDICTED: uncharacterized protein LOC103706119 [Phoenix dactylifera]
20 Hb_143766_040 0.067959245 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]

Gene co-expression network

sample Hb_020141_020 Hb_020141_020 Hb_018709_010 Hb_018709_010 Hb_020141_020--Hb_018709_010 Hb_000563_080 Hb_000563_080 Hb_020141_020--Hb_000563_080 Hb_003188_020 Hb_003188_020 Hb_020141_020--Hb_003188_020 Hb_010358_010 Hb_010358_010 Hb_020141_020--Hb_010358_010 Hb_153208_010 Hb_153208_010 Hb_020141_020--Hb_153208_010 Hb_014034_020 Hb_014034_020 Hb_020141_020--Hb_014034_020 Hb_028013_010 Hb_028013_010 Hb_018709_010--Hb_028013_010 Hb_000025_250 Hb_000025_250 Hb_018709_010--Hb_000025_250 Hb_100786_010 Hb_100786_010 Hb_018709_010--Hb_100786_010 Hb_001032_060 Hb_001032_060 Hb_018709_010--Hb_001032_060 Hb_000419_080 Hb_000419_080 Hb_018709_010--Hb_000419_080 Hb_001301_020 Hb_001301_020 Hb_000563_080--Hb_001301_020 Hb_000563_080--Hb_003188_020 Hb_005464_040 Hb_005464_040 Hb_000563_080--Hb_005464_040 Hb_166232_010 Hb_166232_010 Hb_000563_080--Hb_166232_010 Hb_004254_070 Hb_004254_070 Hb_000563_080--Hb_004254_070 Hb_000446_100 Hb_000446_100 Hb_000563_080--Hb_000446_100 Hb_003188_020--Hb_001301_020 Hb_003188_020--Hb_014034_020 Hb_003188_020--Hb_004254_070 Hb_003188_020--Hb_000446_100 Hb_003188_020--Hb_153208_010 Hb_002944_020 Hb_002944_020 Hb_010358_010--Hb_002944_020 Hb_010358_010--Hb_153208_010 Hb_106528_020 Hb_106528_020 Hb_010358_010--Hb_106528_020 Hb_038238_010 Hb_038238_010 Hb_010358_010--Hb_038238_010 Hb_004190_030 Hb_004190_030 Hb_010358_010--Hb_004190_030 Hb_153208_010--Hb_002944_020 Hb_109163_010 Hb_109163_010 Hb_153208_010--Hb_109163_010 Hb_153208_010--Hb_014034_020 Hb_000563_060 Hb_000563_060 Hb_153208_010--Hb_000563_060 Hb_014034_020--Hb_004254_070 Hb_000500_190 Hb_000500_190 Hb_014034_020--Hb_000500_190 Hb_014034_020--Hb_000446_100 Hb_014034_020--Hb_001301_020 Hb_014034_020--Hb_000025_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.14812 0.0636426 0.221119 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 30.1036 0

CAGE analysis