Hb_004190_030

Information

Type -
Description -
Location Contig4190: 34140-61494
Sequence    

Annotation

kegg
ID pop:POPTR_0016s07480g
description POPTRDRAFT_576542; alcohol dehydroge family protein
nr
ID CBI28275.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q94KL7
description Secoisolariciresinol dehydrogenase (Fragment) OS=Forsythia intermedia PE=1 SV=1
trembl
ID A0A0E0QCD4
description Uncharacterized protein OS=Oryza rufipogon PE=4 SV=1
Gene Ontology
ID GO:0047044
description secoisolariciresinol dehydrogenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41404: 60500-61554
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004190_030 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000563_060 0.0265743341 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
3 Hb_003119_110 0.0289970826 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
4 Hb_001140_330 0.0292725624 - - PREDICTED: uncharacterized protein LOC105142675 [Populus euphratica]
5 Hb_004267_050 0.037692432 - - hypothetical protein JCGZ_04357 [Jatropha curcas]
6 Hb_039363_010 0.0525941979 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
7 Hb_010358_010 0.0530367035 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
8 Hb_002835_020 0.0551841806 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
9 Hb_153208_010 0.0556760471 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
10 Hb_106528_020 0.0580514802 - - Cationic peroxidase 2 precursor [Theobroma cacao]
11 Hb_038238_010 0.0592278418 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
12 Hb_002944_020 0.0596173824 transcription factor TF Family: bZIP hypothetical protein POPTR_0006s05770g, partial [Populus trichocarpa]
13 Hb_109163_010 0.0613362411 - - polyphenol oxidase [Hevea brasiliensis]
14 Hb_000388_160 0.0622914575 - - xyloglucan endo-1 family protein [Populus trichocarpa]
15 Hb_005433_050 0.0635640717 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
16 Hb_002553_170 0.0685781739 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
17 Hb_007437_010 0.0689139833 - - Polygalacturonase precursor, putative [Ricinus communis]
18 Hb_006415_020 0.0700778806 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Jatropha curcas]
19 Hb_000500_190 0.075022504 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
20 Hb_005726_030 0.076081535 - - hypothetical protein CISIN_1g020511mg [Citrus sinensis]

Gene co-expression network

sample Hb_004190_030 Hb_004190_030 Hb_000563_060 Hb_000563_060 Hb_004190_030--Hb_000563_060 Hb_003119_110 Hb_003119_110 Hb_004190_030--Hb_003119_110 Hb_001140_330 Hb_001140_330 Hb_004190_030--Hb_001140_330 Hb_004267_050 Hb_004267_050 Hb_004190_030--Hb_004267_050 Hb_039363_010 Hb_039363_010 Hb_004190_030--Hb_039363_010 Hb_010358_010 Hb_010358_010 Hb_004190_030--Hb_010358_010 Hb_002835_020 Hb_002835_020 Hb_000563_060--Hb_002835_020 Hb_000563_060--Hb_001140_330 Hb_000563_060--Hb_039363_010 Hb_000563_060--Hb_003119_110 Hb_153208_010 Hb_153208_010 Hb_000563_060--Hb_153208_010 Hb_003119_110--Hb_001140_330 Hb_003119_110--Hb_004267_050 Hb_003119_110--Hb_002835_020 Hb_003119_110--Hb_039363_010 Hb_001140_330--Hb_004267_050 Hb_001140_330--Hb_002835_020 Hb_001140_330--Hb_153208_010 Hb_004267_050--Hb_000563_060 Hb_002944_020 Hb_002944_020 Hb_004267_050--Hb_002944_020 Hb_004267_050--Hb_010358_010 Hb_039363_010--Hb_002835_020 Hb_000388_160 Hb_000388_160 Hb_039363_010--Hb_000388_160 Hb_109163_010 Hb_109163_010 Hb_039363_010--Hb_109163_010 Hb_039363_010--Hb_153208_010 Hb_010358_010--Hb_002944_020 Hb_010358_010--Hb_153208_010 Hb_106528_020 Hb_106528_020 Hb_010358_010--Hb_106528_020 Hb_020141_020 Hb_020141_020 Hb_010358_010--Hb_020141_020 Hb_038238_010 Hb_038238_010 Hb_010358_010--Hb_038238_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.691665 0.157897 0.155906 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0110241 0.0173511 0.116611 55.1682 0.0743482

CAGE analysis