Hb_038238_010

Information

Type -
Description -
Location Contig38238: 12091-24234
Sequence    

Annotation

kegg
ID pop:POPTR_0001s30980g
description POPTRDRAFT_798039; hypothetical protein
nr
ID XP_002298737.1
description hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
swissprot
ID Q9AT54
description Scopoletin glucosyltransferase OS=Nicotiana tabacum GN=TOGT1 PE=1 SV=1
trembl
ID B9GHC1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s30980g PE=3 SV=1
Gene Ontology
ID GO:0047213
description scopoletin glucosyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_038238_010 0.0 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
2 Hb_106528_020 0.0357037048 - - Cationic peroxidase 2 precursor [Theobroma cacao]
3 Hb_007437_010 0.0394158487 - - Polygalacturonase precursor, putative [Ricinus communis]
4 Hb_005726_030 0.0416297226 - - hypothetical protein CISIN_1g020511mg [Citrus sinensis]
5 Hb_061590_010 0.0422621291 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
6 Hb_006415_020 0.0444444648 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Jatropha curcas]
7 Hb_187247_010 0.0499478384 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
8 Hb_153208_010 0.051001621 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
9 Hb_010358_010 0.0524341036 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
10 Hb_007337_010 0.0583032608 - - PREDICTED: putative receptor protein kinase ZmPK1 [Jatropha curcas]
11 Hb_004190_030 0.0592278418 - - unnamed protein product [Vitis vinifera]
12 Hb_143766_040 0.0594260245 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
13 Hb_000692_270 0.0597141453 - - PREDICTED: ornithine decarboxylase-like [Jatropha curcas]
14 Hb_109163_010 0.0608963414 - - polyphenol oxidase [Hevea brasiliensis]
15 Hb_002944_020 0.0612671644 transcription factor TF Family: bZIP hypothetical protein POPTR_0006s05770g, partial [Populus trichocarpa]
16 Hb_004981_020 0.061721886 - - PREDICTED: uncharacterized protein LOC103706119 [Phoenix dactylifera]
17 Hb_004267_050 0.0650783147 - - hypothetical protein JCGZ_04357 [Jatropha curcas]
18 Hb_039363_010 0.0674759878 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
19 Hb_000563_060 0.0680975189 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
20 Hb_001140_330 0.068116469 - - PREDICTED: uncharacterized protein LOC105142675 [Populus euphratica]

Gene co-expression network

sample Hb_038238_010 Hb_038238_010 Hb_106528_020 Hb_106528_020 Hb_038238_010--Hb_106528_020 Hb_007437_010 Hb_007437_010 Hb_038238_010--Hb_007437_010 Hb_005726_030 Hb_005726_030 Hb_038238_010--Hb_005726_030 Hb_061590_010 Hb_061590_010 Hb_038238_010--Hb_061590_010 Hb_006415_020 Hb_006415_020 Hb_038238_010--Hb_006415_020 Hb_187247_010 Hb_187247_010 Hb_038238_010--Hb_187247_010 Hb_106528_020--Hb_005726_030 Hb_106528_020--Hb_061590_010 Hb_106528_020--Hb_187247_010 Hb_010358_010 Hb_010358_010 Hb_106528_020--Hb_010358_010 Hb_153208_010 Hb_153208_010 Hb_106528_020--Hb_153208_010 Hb_007437_010--Hb_006415_020 Hb_007437_010--Hb_005726_030 Hb_007437_010--Hb_061590_010 Hb_007437_010--Hb_187247_010 Hb_007437_010--Hb_106528_020 Hb_005726_030--Hb_061590_010 Hb_005726_030--Hb_187247_010 Hb_007337_010 Hb_007337_010 Hb_005726_030--Hb_007337_010 Hb_143766_040 Hb_143766_040 Hb_005726_030--Hb_143766_040 Hb_004981_020 Hb_004981_020 Hb_005726_030--Hb_004981_020 Hb_061590_010--Hb_187247_010 Hb_061590_010--Hb_007337_010 Hb_061590_010--Hb_143766_040 Hb_061590_010--Hb_004981_020 Hb_006415_020--Hb_005726_030 Hb_006415_020--Hb_061590_010 Hb_006415_020--Hb_187247_010 Hb_006415_020--Hb_106528_020 Hb_187247_010--Hb_007337_010 Hb_187247_010--Hb_143766_040 Hb_187247_010--Hb_004981_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0634277 0 0.010687 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.94151 0

CAGE analysis