Hb_006415_020

Information

Type -
Description -
Location Contig6415: 35250-39808
Sequence    

Annotation

kegg
ID rcu:RCOM_0264660
description purine permease, putative
nr
ID XP_012093143.1
description PREDICTED: nucleobase-ascorbate transporter 4-like [Jatropha curcas]
swissprot
ID P93039
description Nucleobase-ascorbate transporter 4 OS=Arabidopsis thaliana GN=NAT4 PE=2 SV=2
trembl
ID B9T8H8
description Purine permease, putative OS=Ricinus communis GN=RCOM_0264660 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006415_020 0.0 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Jatropha curcas]
2 Hb_007437_010 0.0105385261 - - Polygalacturonase precursor, putative [Ricinus communis]
3 Hb_038238_010 0.0444444648 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
4 Hb_005726_030 0.0451665285 - - hypothetical protein CISIN_1g020511mg [Citrus sinensis]
5 Hb_061590_010 0.0464293891 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
6 Hb_187247_010 0.0589886536 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
7 Hb_106528_020 0.0597407503 - - Cationic peroxidase 2 precursor [Theobroma cacao]
8 Hb_000008_130 0.0680385053 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
9 Hb_000013_040 0.0680385053 - - -
10 Hb_000013_070 0.0680385053 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_000014_180 0.0680385053 - - PREDICTED: endo-1,4-beta-xylanase D-like [Fragaria vesca subsp. vesca]
12 Hb_000021_080 0.0680385053 - - -
13 Hb_000031_270 0.0680385053 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
14 Hb_000035_070 0.0680385053 - - PREDICTED: uncharacterized protein LOC104814513 [Tarenaya hassleriana]
15 Hb_000041_140 0.0680385053 - - -
16 Hb_000043_130 0.0680385053 - - -
17 Hb_000045_240 0.0680385053 - - -
18 Hb_000056_270 0.0680385053 - - Origin recognition complex subunit, putative [Ricinus communis]
19 Hb_000057_150 0.0680385053 - - hypothetical protein EUTSA_v10009202mg [Eutrema salsugineum]
20 Hb_000059_250 0.0680385053 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]

Gene co-expression network

sample Hb_006415_020 Hb_006415_020 Hb_007437_010 Hb_007437_010 Hb_006415_020--Hb_007437_010 Hb_038238_010 Hb_038238_010 Hb_006415_020--Hb_038238_010 Hb_005726_030 Hb_005726_030 Hb_006415_020--Hb_005726_030 Hb_061590_010 Hb_061590_010 Hb_006415_020--Hb_061590_010 Hb_187247_010 Hb_187247_010 Hb_006415_020--Hb_187247_010 Hb_106528_020 Hb_106528_020 Hb_006415_020--Hb_106528_020 Hb_007437_010--Hb_005726_030 Hb_007437_010--Hb_061590_010 Hb_007437_010--Hb_038238_010 Hb_007437_010--Hb_187247_010 Hb_007437_010--Hb_106528_020 Hb_038238_010--Hb_106528_020 Hb_038238_010--Hb_005726_030 Hb_038238_010--Hb_061590_010 Hb_038238_010--Hb_187247_010 Hb_005726_030--Hb_061590_010 Hb_005726_030--Hb_187247_010 Hb_007337_010 Hb_007337_010 Hb_005726_030--Hb_007337_010 Hb_143766_040 Hb_143766_040 Hb_005726_030--Hb_143766_040 Hb_004981_020 Hb_004981_020 Hb_005726_030--Hb_004981_020 Hb_061590_010--Hb_187247_010 Hb_061590_010--Hb_007337_010 Hb_061590_010--Hb_143766_040 Hb_061590_010--Hb_004981_020 Hb_187247_010--Hb_007337_010 Hb_187247_010--Hb_143766_040 Hb_187247_010--Hb_004981_020 Hb_187247_010--Hb_106528_020 Hb_106528_020--Hb_005726_030 Hb_106528_020--Hb_061590_010 Hb_010358_010 Hb_010358_010 Hb_106528_020--Hb_010358_010 Hb_153208_010 Hb_153208_010 Hb_106528_020--Hb_153208_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0277059 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.97479 0

CAGE analysis