Hb_001140_330

Information

Type -
Description -
Location Contig1140: 289449-290253
Sequence    

Annotation

kegg
ID pop:POPTR_0015s13050g
description POPTRDRAFT_824932; hypothetical protein
nr
ID XP_011048721.1
description PREDICTED: uncharacterized protein LOC105142675 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A9PER3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s13050g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04215: 289127-290254
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001140_330 0.0 - - PREDICTED: uncharacterized protein LOC105142675 [Populus euphratica]
2 Hb_004190_030 0.0292725624 - - unnamed protein product [Vitis vinifera]
3 Hb_000563_060 0.0367408442 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
4 Hb_004267_050 0.0399800157 - - hypothetical protein JCGZ_04357 [Jatropha curcas]
5 Hb_003119_110 0.0416029947 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
6 Hb_002835_020 0.0560829548 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
7 Hb_153208_010 0.0576401763 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
8 Hb_039363_010 0.0585560013 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
9 Hb_010358_010 0.0595900185 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
10 Hb_109163_010 0.0596369696 - - polyphenol oxidase [Hevea brasiliensis]
11 Hb_002944_020 0.0607837864 transcription factor TF Family: bZIP hypothetical protein POPTR_0006s05770g, partial [Populus trichocarpa]
12 Hb_002553_170 0.063647475 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
13 Hb_106528_020 0.0645685322 - - Cationic peroxidase 2 precursor [Theobroma cacao]
14 Hb_000388_160 0.0660135812 - - xyloglucan endo-1 family protein [Populus trichocarpa]
15 Hb_038238_010 0.068116469 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
16 Hb_005433_050 0.0720423896 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
17 Hb_000500_190 0.0764781675 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
18 Hb_004057_050 0.0767593285 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
19 Hb_003188_020 0.0773088714 - - chitinase, putative [Ricinus communis]
20 Hb_000828_030 0.079450296 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]

Gene co-expression network

sample Hb_001140_330 Hb_001140_330 Hb_004190_030 Hb_004190_030 Hb_001140_330--Hb_004190_030 Hb_000563_060 Hb_000563_060 Hb_001140_330--Hb_000563_060 Hb_004267_050 Hb_004267_050 Hb_001140_330--Hb_004267_050 Hb_003119_110 Hb_003119_110 Hb_001140_330--Hb_003119_110 Hb_002835_020 Hb_002835_020 Hb_001140_330--Hb_002835_020 Hb_153208_010 Hb_153208_010 Hb_001140_330--Hb_153208_010 Hb_004190_030--Hb_000563_060 Hb_004190_030--Hb_003119_110 Hb_004190_030--Hb_004267_050 Hb_039363_010 Hb_039363_010 Hb_004190_030--Hb_039363_010 Hb_010358_010 Hb_010358_010 Hb_004190_030--Hb_010358_010 Hb_000563_060--Hb_002835_020 Hb_000563_060--Hb_039363_010 Hb_000563_060--Hb_003119_110 Hb_000563_060--Hb_153208_010 Hb_004267_050--Hb_003119_110 Hb_004267_050--Hb_000563_060 Hb_002944_020 Hb_002944_020 Hb_004267_050--Hb_002944_020 Hb_004267_050--Hb_010358_010 Hb_003119_110--Hb_002835_020 Hb_003119_110--Hb_039363_010 Hb_002835_020--Hb_039363_010 Hb_002553_170 Hb_002553_170 Hb_002835_020--Hb_002553_170 Hb_000388_160 Hb_000388_160 Hb_002835_020--Hb_000388_160 Hb_003334_080 Hb_003334_080 Hb_002835_020--Hb_003334_080 Hb_001930_060 Hb_001930_060 Hb_002835_020--Hb_001930_060 Hb_003188_020 Hb_003188_020 Hb_153208_010--Hb_003188_020 Hb_153208_010--Hb_002944_020 Hb_109163_010 Hb_109163_010 Hb_153208_010--Hb_109163_010 Hb_153208_010--Hb_010358_010 Hb_014034_020 Hb_014034_020 Hb_153208_010--Hb_014034_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.64713 0.841028 0.966225 0 0.199685
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.104072 0.245364 0.427834 226.446 0.157758

CAGE analysis