Hb_000462_100

Information

Type -
Description -
Location Contig462: 134958-136975
Sequence    

Annotation

kegg
ID rcu:RCOM_1352440
description Leucoanthocyanidin dioxygenase, putative (EC:1.14.11.23)
nr
ID XP_002519428.1
description Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
swissprot
ID D4N501
description Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1
trembl
ID B9S0A9
description Leucoanthocyanidin dioxygenase, putative OS=Ricinus communis GN=RCOM_1352440 PE=3 SV=1
Gene Ontology
ID GO:0005506
description probable 2-oxoglutarate fe -dependent dioxygenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000462_100 0.0 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
2 Hb_010839_040 0.0061553858 - - hypothetical protein JCGZ_20868 [Jatropha curcas]
3 Hb_002835_030 0.020982773 - - PREDICTED: lysM domain receptor-like kinase 4 [Vitis vinifera]
4 Hb_000589_280 0.0241081669 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
5 Hb_002758_020 0.0447616509 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
6 Hb_100786_010 0.0493759583 - - hypothetical protein B456_008G202600 [Gossypium raimondii]
7 Hb_005464_040 0.0656034511 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_166232_010 0.0664988363 - - hypothetical protein JCGZ_22831 [Jatropha curcas]
9 Hb_000563_080 0.0707887614 - - -
10 Hb_001165_040 0.0713573219 - - hypothetical protein POPTR_0009s10120g [Populus trichocarpa]
11 Hb_020141_020 0.0818701384 - - -
12 Hb_001301_020 0.0824820204 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
13 Hb_020025_020 0.0831892833 - - SENESCENCE-RELATED GENE 1 family protein [Populus trichocarpa]
14 Hb_018709_010 0.0839662294 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
15 Hb_001930_060 0.0901888729 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
16 Hb_003188_020 0.0917532137 - - chitinase, putative [Ricinus communis]
17 Hb_000025_250 0.0947420736 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
18 Hb_178389_020 0.0980173984 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
19 Hb_028013_010 0.0980407869 - - alcohol dehydrogenase, putative [Ricinus communis]
20 Hb_032717_030 0.0993861526 - - PREDICTED: CASP-like protein 1B2 [Jatropha curcas]

Gene co-expression network

sample Hb_000462_100 Hb_000462_100 Hb_010839_040 Hb_010839_040 Hb_000462_100--Hb_010839_040 Hb_002835_030 Hb_002835_030 Hb_000462_100--Hb_002835_030 Hb_000589_280 Hb_000589_280 Hb_000462_100--Hb_000589_280 Hb_002758_020 Hb_002758_020 Hb_000462_100--Hb_002758_020 Hb_100786_010 Hb_100786_010 Hb_000462_100--Hb_100786_010 Hb_005464_040 Hb_005464_040 Hb_000462_100--Hb_005464_040 Hb_010839_040--Hb_002835_030 Hb_010839_040--Hb_000589_280 Hb_010839_040--Hb_002758_020 Hb_010839_040--Hb_100786_010 Hb_166232_010 Hb_166232_010 Hb_010839_040--Hb_166232_010 Hb_002835_030--Hb_002758_020 Hb_002835_030--Hb_000589_280 Hb_002835_030--Hb_166232_010 Hb_002835_030--Hb_100786_010 Hb_000589_280--Hb_100786_010 Hb_000589_280--Hb_002758_020 Hb_000589_280--Hb_005464_040 Hb_002758_020--Hb_166232_010 Hb_000563_080 Hb_000563_080 Hb_002758_020--Hb_000563_080 Hb_018709_010 Hb_018709_010 Hb_100786_010--Hb_018709_010 Hb_020141_020 Hb_020141_020 Hb_100786_010--Hb_020141_020 Hb_005464_040--Hb_000563_080 Hb_001301_020 Hb_001301_020 Hb_005464_040--Hb_001301_020 Hb_000025_250 Hb_000025_250 Hb_005464_040--Hb_000025_250 Hb_003188_020 Hb_003188_020 Hb_005464_040--Hb_003188_020 Hb_005464_040--Hb_166232_010 Hb_000446_100 Hb_000446_100 Hb_005464_040--Hb_000446_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0188216 0 0.0144349 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.447701 0

CAGE analysis