Hb_009780_060

Information

Type rubber biosynthesis
Description Gene Name: Geranyl geranyl diphosphate synthase
Location Contig9780: 48291-49412
Sequence    

Annotation

kegg
ID rcu:RCOM_0013160
description geranyl geranyl pyrophosphate synthase, putative (EC:1.3.1.74)
nr
ID XP_002531191.1
description geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
swissprot
ID Q94ID7
description Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1
trembl
ID B9SYX2
description Geranyl geranyl pyrophosphate synthase, putative OS=Ricinus communis GN=RCOM_0013160 PE=3 SV=1
Gene Ontology
ID GO:0004161
description geranylgeranyl pyrophosphate chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64247: 49315-49443
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009780_060 0.0 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
2 Hb_002900_020 0.0679952488 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
3 Hb_004592_020 0.074362415 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
4 Hb_005433_050 0.0768004365 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
5 Hb_000229_080 0.0786721504 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
6 Hb_000445_020 0.0787673325 - - GABA-specific permease, putative [Ricinus communis]
7 Hb_000025_250 0.0797681155 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
8 Hb_000203_240 0.0830624862 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_058620_010 0.0838806331 - - cytochrome P450, putative [Ricinus communis]
10 Hb_000155_140 0.0843286194 - - o-methyltransferase, putative [Ricinus communis]
11 Hb_000500_190 0.0894384241 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
12 Hb_000483_020 0.090573685 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
13 Hb_014034_020 0.0912651347 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
14 Hb_032717_030 0.0921561055 - - PREDICTED: CASP-like protein 1B2 [Jatropha curcas]
15 Hb_000488_040 0.0928868403 - - unnamed protein product [Vitis vinifera]
16 Hb_004254_070 0.0943355322 transcription factor TF Family: NAC hypothetical protein POPTR_0015s03700g [Populus trichocarpa]
17 Hb_018709_010 0.0951104602 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
18 Hb_012506_080 0.0955055766 - - amino acid transporter, putative [Ricinus communis]
19 Hb_028013_010 0.096865689 - - alcohol dehydrogenase, putative [Ricinus communis]
20 Hb_000405_040 0.0971258349 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]

Gene co-expression network

sample Hb_009780_060 Hb_009780_060 Hb_002900_020 Hb_002900_020 Hb_009780_060--Hb_002900_020 Hb_004592_020 Hb_004592_020 Hb_009780_060--Hb_004592_020 Hb_005433_050 Hb_005433_050 Hb_009780_060--Hb_005433_050 Hb_000229_080 Hb_000229_080 Hb_009780_060--Hb_000229_080 Hb_000445_020 Hb_000445_020 Hb_009780_060--Hb_000445_020 Hb_000025_250 Hb_000025_250 Hb_009780_060--Hb_000025_250 Hb_000488_040 Hb_000488_040 Hb_002900_020--Hb_000488_040 Hb_002900_020--Hb_004592_020 Hb_000483_020 Hb_000483_020 Hb_002900_020--Hb_000483_020 Hb_004564_010 Hb_004564_010 Hb_002900_020--Hb_004564_010 Hb_001032_060 Hb_001032_060 Hb_002900_020--Hb_001032_060 Hb_004592_020--Hb_000488_040 Hb_004592_020--Hb_001032_060 Hb_000419_080 Hb_000419_080 Hb_004592_020--Hb_000419_080 Hb_004592_020--Hb_000483_020 Hb_018709_010 Hb_018709_010 Hb_004592_020--Hb_018709_010 Hb_000203_240 Hb_000203_240 Hb_005433_050--Hb_000203_240 Hb_106528_020 Hb_106528_020 Hb_005433_050--Hb_106528_020 Hb_010358_010 Hb_010358_010 Hb_005433_050--Hb_010358_010 Hb_000563_060 Hb_000563_060 Hb_005433_050--Hb_000563_060 Hb_002944_020 Hb_002944_020 Hb_005433_050--Hb_002944_020 Hb_005433_050--Hb_000229_080 Hb_000500_190 Hb_000500_190 Hb_000229_080--Hb_000500_190 Hb_014034_020 Hb_014034_020 Hb_000229_080--Hb_014034_020 Hb_004254_070 Hb_004254_070 Hb_000229_080--Hb_004254_070 Hb_000229_080--Hb_000563_060 Hb_003188_020 Hb_003188_020 Hb_000229_080--Hb_003188_020 Hb_000446_100 Hb_000446_100 Hb_000229_080--Hb_000446_100 Hb_000445_020--Hb_004592_020 Hb_000445_020--Hb_002900_020 Hb_000445_020--Hb_005433_050 Hb_000445_020--Hb_000488_040 Hb_003446_030 Hb_003446_030 Hb_000445_020--Hb_003446_030 Hb_000025_250--Hb_014034_020 Hb_000025_250--Hb_004254_070 Hb_000025_250--Hb_018709_010 Hb_020141_020 Hb_020141_020 Hb_000025_250--Hb_020141_020 Hb_005464_040 Hb_005464_040 Hb_000025_250--Hb_005464_040 Hb_000563_080 Hb_000563_080 Hb_000025_250--Hb_000563_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.15717 0.430856 0.184291 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.131975 0.0346029 0.064139 41.3061 0.356658

CAGE analysis